Ss1.1-Pig1-90O24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCCAGCGTGGCGCGCAAGGCTGCCCTGCTGTCCCGGTTCAGCGATGCCTACTCCCAGGC CCGCCTGGATGCGCAGTGCCTGCTGCGGCGCTGCATCGACAAAGCCGAGACCGTGCAGCG GATCATCTACATCGCCACGGTGGAGGCATTCCATGTAGCCAAAATGGCATTCAGACATTT CAAGATCCGAGTGAGGAAATCATTGACACCGTCTTACGCGGGGTCAAATGACTTTGAAGA TGCTGTCTTGGATTATATCATTTGTCATCTTGATCTATATGATTCCCAGAGCAGTGTTAA CGATGTGATCCGAGCCATGAATGTCAATCCCAAGATTTCATTCCCTCCTGAAGTTGACTT TTGCCTCCTCAGTAACTTCATCCAGGAGATATGTTGCATTGCCTTTGCAATGCAGACACT AGACCCACCCCTAGATATTGCATTTGGGGCCGATGGAGAAATTTTTAATGATTGCAAGTA CCGTCGAAGCTATGACTCCGACTTCACAGCTCCCTTGGTGTTTTATCACGTGTGGCCTGC TCTCATGGAGAATGACTGTGTCATTATGAAAGGAGAAGCTGTCACCAGGAGAGGGGCTTT TGTACGGTGGCCTTGCATAGGGACAATTCATCCCAAGTGTTTGATTCACAAGTTCGAGAA CATTTATAAACC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCCAGCGTGGCGCGCAAGGCTGCCCTGCTGTCCCGGTTCAGCGATGCCTACTCCCAGGC CCGCCTGGATGCGCAGTGCCTGCTGCGGCGCTGCATCGACAAAGCCGAGACCGTGCAGCG GATCATCTACATCGCCACGGTGGAGGCATTCCATGTAGCCAAAATGGCATTCAGACATTT CAAGATCCGAGTGAGGAAATCATTGACACCGTCTTACGCGGGGTCAAATGACTTTGAAGA TGCTGTCTTGGATTATATCATTTGTCATCTTGATCTATATGATTCCCAGAGCAGTGTTAA CGATGTGATCCGAGCCATGAATGTCAATCCCAAGATTTCATTCCCTCCTGAAGTTGACTT TTGCCTCCTCAGTAACTTCATCCAGGAGATATGTTGCATTGCCTTTGCAATGCAGACACT AGACCCACCCCTAGATATTGCATTTGGGGCCGATGGAGAAATTTTTAATGATTGCAAGTA CCGTCGAAGCTATGACTCCGACTTCACAGCTCCCTTGGTGTTTTATCACGTGTGGCCTGC TCTCATGGAGAATGACTGTGTCATTATGAAAGGAGAAGCTGTCACCAGGAGAGGGGCTTT TGTACGGTGGCCTTGCATAGGGACAATTCATCCCAAGTGTTTGATTCACAAGTTCGAGAA CATTTATAAACC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 297-480, - strand, RNAz p=0.99071 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 297-480, - strand, RNAz p=0.99071 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-143, gnl|bosTau2|chr6 (36912651-36912793) | |
| 1-143, gnl|canFam2|chr13 (47955835-47955999) | |
| 1-143, gnl|galGal2|chr4 (66629886-66629724) | |
| 1-143, gnl|hg17|chr4 (52783976-52784140) | |
| 1-143, gnl|Hg17|chr4 (52783993-52784135) | |
| 1-143, gnl|loxAfr1|scaffold_16109 (4548-4712) | |
| 1-143, gnl|mm7|chr5 (73044357-73044523) | |
| 1-143, gnl|Mm7|chr5 (73044374-73044516) | |
| 1-143, gnl|oryCun1|scaffold_182745 (11455-11621) | |
| 1-143, gnl|panTro1|chr3 (93921354-93921190) | |
| 1-143, gnl|rheMac2|chr5 (77304723-77304559) | |
| 1-143, gnl|rn3|chr14 (36942195-36942029) | |
| 1-143, gnl|tetNig1|chr1_random (1887022-1887186) | |
| 1-143, gnl|xenTro1|scaffold_61 (1897590-1897754) | |
| 297-480, gnl|bosTau2|chr6 (36917378-36917561) | |
| 297-480, gnl|canFam2|chr13 (47958912-47959117) | |
| 297-480, gnl|dasNov1|scaffold_2945 (56480-56296) | |
| 297-480, gnl|echTel1|scaffold_311597 (40831-41037) | |
| 297-480, gnl|fr1|chrUn (37546613-37546413) | |
| 297-480, gnl|galGal2|chr4 (66628121-66627903) | |
| 297-480, gnl|hg17|chr4 (52786816-52787020) | |
| 297-480, gnl|Hg17|chr4 (52786833-52787016) | |
| 297-480, gnl|loxAfr1|scaffold_16109 (7879-8086) | |
| 297-480, gnl|mm7|chr5 (73047098-73047302) | |
| 297-480, gnl|Mm7|chr5 (73047115-73047298) | |
| 297-480, gnl|monDom2|scaffold_26 (15826750-15826947) | |
| 297-480, gnl|oryCun1|scaffold_182745 (13522-13726) | |
| 297-480, gnl|panTro1|chr3 (93918461-93918257) | |
| 297-480, gnl|rheMac2|chr5 (77301741-77301537) | |
| 297-480, gnl|rn3|chr14 (36938543-36938341) | |
| 297-480, gnl|tetNig1|chr1_random (1887510-1887696) | |
| 297-480, gnl|xenTro1|scaffold_61 (1900323-1900513) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-143, gnl|bosTau2|chr6 (36912651-36912793) | |
| 1-143, gnl|canFam2|chr13 (47955835-47955999) | |
| 1-143, gnl|galGal2|chr4 (66629886-66629724) | |
| 1-143, gnl|hg17|chr4 (52783976-52784140) | |
| 1-143, gnl|Hg17|chr4 (52783993-52784135) | |
| 1-143, gnl|loxAfr1|scaffold_16109 (4548-4712) | |
| 1-143, gnl|mm7|chr5 (73044357-73044523) | |
| 1-143, gnl|Mm7|chr5 (73044374-73044516) | |
| 1-143, gnl|oryCun1|scaffold_182745 (11455-11621) | |
| 1-143, gnl|panTro1|chr3 (93921354-93921190) | |
| 1-143, gnl|rheMac2|chr5 (77304723-77304559) | |
| 1-143, gnl|rn3|chr14 (36942195-36942029) | |
| 1-143, gnl|tetNig1|chr1_random (1887022-1887186) | |
| 1-143, gnl|xenTro1|scaffold_61 (1897590-1897754) | |
| 297-480, gnl|bosTau2|chr6 (36917378-36917561) | |
| 297-480, gnl|canFam2|chr13 (47958912-47959117) | |
| 297-480, gnl|dasNov1|scaffold_2945 (56480-56296) | |
| 297-480, gnl|echTel1|scaffold_311597 (40831-41037) | |
| 297-480, gnl|fr1|chrUn (37546613-37546413) | |
| 297-480, gnl|galGal2|chr4 (66628121-66627903) | |
| 297-480, gnl|hg17|chr4 (52786816-52787020) | |
| 297-480, gnl|Hg17|chr4 (52786833-52787016) | |
| 297-480, gnl|loxAfr1|scaffold_16109 (7879-8086) | |
| 297-480, gnl|mm7|chr5 (73047098-73047302) | |
| 297-480, gnl|Mm7|chr5 (73047115-73047298) | |
| 297-480, gnl|monDom2|scaffold_26 (15826750-15826947) | |
| 297-480, gnl|oryCun1|scaffold_182745 (13522-13726) | |
| 297-480, gnl|panTro1|chr3 (93918461-93918257) | |
| 297-480, gnl|rheMac2|chr5 (77301741-77301537) | |
| 297-480, gnl|rn3|chr14 (36938543-36938341) | |
| 297-480, gnl|tetNig1|chr1_random (1887510-1887696) | |
| 297-480, gnl|xenTro1|scaffold_61 (1900323-1900513) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) |