Non-Coding RNA Search

Ss1.1-Pig1-91E08.5

Sequence:


               
               GTCCCTGCAGCCTTGGGGCCCAGCTGGGCATTCTGCTAGGCTCTGCTAGCTATTTTCCCA
CCAGCGCCTTGCCCGCCCCAATCCCACATCTCCCTCCTTTCAGCTGGGCCATGAGCCCCT
TTGGGAGGAAGGAGGCAAGTCCCACGAAGGCCGAGGACAGTGGAGTCCTGCCTAGTGAGA
GGCCGTGGGGGCAGCGGCCCCGTCCTATACATTGTCAGCCCCGGGGAGAGGATGTTTGGC
TGGAAGGACTGGAATGTAGATGCCATCATTTCTGATTTTGTGACATTTCCGCTCGGAAGG
GTCCCATCCCCCCTTCCCACTCCTCAGCATGTGTGCCAGCTCTCCCCTGTCTCGGGCGTG
GTCCTTCCGCACTGCAGCCCGGAGTGCTGCCGTTTAATTGTGACGAGATGCCTCTGTGTG
CTAGAACCCCAGAAGTGTAGCTTGGAAACGATGACCTGTGTGATGATGACTTTTCTGTTT
TTCCTCTTGGCGAGGAGGTGATTTGTAGACCCCTGACTGCCTAGGTCATGTAAATAGTGT
ACATTTAATTTATTGCTAGGGTAGCATATTGTATTTGTTAATGTATAAAACAAATTCTAA
AGGTCGACAAATGTATATTTTGTTGCTTACATGTGTCTTTGCAGAAATTGACAATAAATA
AGATATTTTGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCTGCAGCCTTGGGGCCCAGCTGGGCATTCTGCTAGGCTCTGCTAGCTATTTTCCCA
CCAGCGCCTTGCCCGCCCCAATCCCACATCTCCCTCCTTTCAGCTGGGCCATGAGCCCCT
TTGGGAGGAAGGAGGCAAGTCCCACGAAGGCCGAGGACAGTGGAGTCCTGCCTAGTGAGA
GGCCGTGGGGGCAGCGGCCCCGTCCTATACATTGTCAGCCCCGGGGAGAGGATGTTTGGC
TGGAAGGACTGGAATGTAGATGCCATCATTTCTGATTTTGTGACATTTCCGCTCGGAAGG
GTCCCATCCCCCCTTCCCACTCCTCAGCATGTGTGCCAGCTCTCCCCTGTCTCGGGCGTG
GTCCTTCCGCACTGCAGCCCGGAGTGCTGCCGTTTAATTGTGACGAGATGCCTCTGTGTG
CTAGAACCCCAGAAGTGTAGCTTGGAAACGATGACCTGTGTGATGATGACTTTTCTGTTT
TTCCTCTTGGCGAGGAGGTGATTTGTAGACCCCTGACTGCCTAGGTCATGTAAATAGTGT
ACATTTAATTTATTGCTAGGGTAGCATATTGTATTTGTTAATGTATAAAACAAATTCTAA
AGGTCGACAAATGTATATTTTGTTGCTTACATGTGTCTTTGCAGAAATTGACAATAAATA
AGATATTTTGTGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               73-229, - strand, RNAz p=0.971734

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               73-229, - strand, RNAz p=0.971734

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-674, gnl|bosTau2|chr19 (18432845-18433538)
               

               
               1-674, gnl|Hg17|chr17 (2887104-2887783)
               

               
               1-674, gnl|Mm7|chr11 (74465695-74465059)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-674, gnl|bosTau2|chr19 (18432845-18433538)
               

               
               1-674, gnl|Hg17|chr17 (2887104-2887783)
               

               
               1-674, gnl|Mm7|chr11 (74465695-74465059)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sto (0.359648)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sto (0.359648)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               sag (0.182715)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

	1-674, gnl\|bosTau2\|chr19 (18432845-18433538)
	1-674, gnl\|Hg17\|chr17 (2887104-2887783)
	1-674, gnl\|Mm7\|chr11 (74465695-74465059)

	sto (0.359648)
	fce (0.271592)
	cbe (0.239234)
	sag (0.182715)
	fhi (0.169578)
	cje (0.165235)
	csp (0.161186)
	hlv (0.139256)
	che (0.136314)
	pgl (0.118483)