Ss1.1-Pig1-91E22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACACCAAGGGGCGCACTGGGGACCAGCGCACAGCAAACAGGTACTTGTGGGTGAGCCGCA GGGAGGCCAGGGGCGGGGCCTGCAGCATGGAGTACAGGTGGACGTGGCCGTCGGTCCCTG CGCTCAGGAAGAGATTCCTGTGGAAGGGGGAGCAGCTCACAGAGTAGACGGGACCACCGT GGGGGGAGAAGGTGAACTGTGCCGGGGCCCGCAGGGGCACAGAGCTGGGCATCCGCGTGA GGGCGGCCTCCGCCGCCGCCAGGGAGCACTTGAGCGGGAAGCCTCCCTCTGTGCCCAGCA CGAACAGGCTGGAGTCGAAGCTGGAGAAGGCCACCGCCGTGGCGCCCACCTCGGTCTCCC CCCGGGGAGGCTTCTTCAGCTTGGTGTTCCTGGGGAGCTGCTGCACGGCCAGGGCGAAGC CCGCGCTGAGCCGCAGCCGGCCCCCCGTGCCCCCCTGCCAGAGCAGCACCTTCCCGTCCG CGGCCGCGCTCAGCACCTGGAAGCGCTGGCTGTGCCGGGGCTCGGGGAGCCAGAGCACCT GGTACACGGGATCTGTGTGGGTGTCGTCGGTCAGGCCCGTGCGCCACAGCAAGGGGTCCT CAGGACGGCTCAGGTCCCACACGAGCACCTCGCCGCTGTACAGCCCGCCTGCAACGTGGG CCGGCTGCGTGGGGTGGAAGGCCAGGCACATGACGGCGCTGGGCACCTCCACCACCGCCG ACGGCTGCTGGGGCTTCAGGCCTCGCCGATCCAGATTCCAGGCACACACGAAGGACTTCA GCGTGCTCCAGTCGCCATCATCCAGCCGGCCATAGGCACAGCCCACGACAGAGCCCGTGG TGTTCCAGGAGACACTGGTCACATGCAGACCCTGTGCTTGGGCTGGAGGGTAGCCCAGGG TATGCAGGCAGGTCACCGTCGGCTGCTGCTCCGCCCAGTTCACCTCGAAGCCGTCAAATG CATGGCTCTGCCAGTTCTTGTTCAGTTCTCGAGTAACCATGGGCTCCACTCTCCGGAGAA AGGCTGCGAGCCCGGGGCCATCGCTCCAGGACACAGAGGAGGGCACGCTGACTGGCTCGG GGGCCTCGGTCTGCACCTCGGCATCTGCATGCTTCCAGGTCTGGGCGGACACTTCAGTGG TGGCAATGCTGGCCGTCTGACAGCTTTTCGTCTCCCCGCGGATGCCCTGGACGGCCCTCC ACTGCGAAGGCACCGACGCTACGCCCAGGGTCTCGTCCTGCAGCGGCCCGGGCCGCTCGG GCCCCTCGGGACTCGCAATCCCGCGGGTCGCCAGCGCCTCAGCACCCGCCCTTCCCGCCG GGAAGAGTTGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACACCAAGGGGCGCACTGGGGACCAGCGCACAGCAAACAGGTACTTGTGGGTGAGCCGCA GGGAGGCCAGGGGCGGGGCCTGCAGCATGGAGTACAGGTGGACGTGGCCGTCGGTCCCTG CGCTCAGGAAGAGATTCCTGTGGAAGGGGGAGCAGCTCACAGAGTAGACGGGACCACCGT GGGGGGAGAAGGTGAACTGTGCCGGGGCCCGCAGGGGCACAGAGCTGGGCATCCGCGTGA GGGCGGCCTCCGCCGCCGCCAGGGAGCACTTGAGCGGGAAGCCTCCCTCTGTGCCCAGCA CGAACAGGCTGGAGTCGAAGCTGGAGAAGGCCACCGCCGTGGCGCCCACCTCGGTCTCCC CCCGGGGAGGCTTCTTCAGCTTGGTGTTCCTGGGGAGCTGCTGCACGGCCAGGGCGAAGC CCGCGCTGAGCCGCAGCCGGCCCCCCGTGCCCCCCTGCCAGAGCAGCACCTTCCCGTCCG CGGCCGCGCTCAGCACCTGGAAGCGCTGGCTGTGCCGGGGCTCGGGGAGCCAGAGCACCT GGTACACGGGATCTGTGTGGGTGTCGTCGGTCAGGCCCGTGCGCCACAGCAAGGGGTCCT CAGGACGGCTCAGGTCCCACACGAGCACCTCGCCGCTGTACAGCCCGCCTGCAACGTGGG CCGGCTGCGTGGGGTGGAAGGCCAGGCACATGACGGCGCTGGGCACCTCCACCACCGCCG ACGGCTGCTGGGGCTTCAGGCCTCGCCGATCCAGATTCCAGGCACACACGAAGGACTTCA GCGTGCTCCAGTCGCCATCATCCAGCCGGCCATAGGCACAGCCCACGACAGAGCCCGTGG TGTTCCAGGAGACACTGGTCACATGCAGACCCTGTGCTTGGGCTGGAGGGTAGCCCAGGG TATGCAGGCAGGTCACCGTCGGCTGCTGCTCCGCCCAGTTCACCTCGAAGCCGTCAAATG CATGGCTCTGCCAGTTCTTGTTCAGTTCTCGAGTAACCATGGGCTCCACTCTCCGGAGAA AGGCTGCGAGCCCGGGGCCATCGCTCCAGGACACAGAGGAGGGCACGCTGACTGGCTCGG GGGCCTCGGTCTGCACCTCGGCATCTGCATGCTTCCAGGTCTGGGCGGACACTTCAGTGG TGGCAATGCTGGCCGTCTGACAGCTTTTCGTCTCCCCGCGGATGCCCTGGACGGCCCTCC ACTGCGAAGGCACCGACGCTACGCCCAGGGTCTCGTCCTGCAGCGGCCCGGGCCGCTCGG GCCCCTCGGGACTCGCAATCCCGCGGGTCGCCAGCGCCTCAGCACCCGCCCTTCCCGCCG GGAAGAGTTGCC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 137-372, gnl|bosTau2|chr11 (78450593-78450828) | |
| 137-372, gnl|canFam2|chr9 (58296840-58296689) | |
| 137-372, gnl|dasNov1|scaffold_3083 (6139-5988) | |
| 137-372, gnl|fr1|chrUn (200500690-200500844) | |
| 137-372, gnl|galGal2|chr17 (5564742-5564591) | |
| 137-372, gnl|hg17|chr9 (128476521-128476672) | |
| 137-372, gnl|Hg17|chr9 (128476521-128476756) | |
| 137-372, gnl|loxAfr1|scaffold_3413 (16573-16422) | |
| 137-372, gnl|mm7|chr2 (30039712-30039863) | |
| 137-372, gnl|Mm7|chr2 (30039712-30039947) | |
| 137-372, gnl|monDom2|scaffold_51 (3169393-3169544) | |
| 137-372, gnl|oryCun1|scaffold_199136 (10228-10380) | |
| 137-372, gnl|panTro1|chr11 (113313683-113313834) | |
| 137-372, gnl|rheMac2|chr15 (10223831-10223680) | |
| 137-372, gnl|rn3|chr3 (9022958-9023109) | |
| 137-372, gnl|tetNig1|chrUn_random (87511838-87511987) | |
| 137-372, gnl|xenTro1|scaffold_82 (260945-260794) | |
| 635-840, gnl|bosTau2|chr11 (78452270-78452476) | |
| 635-840, gnl|Hg17|chr9 (128478102-128478308) | |
| 635-840, gnl|Mm7|chr2 (30041095-30041305) | |
| 915-1169, gnl|bosTau2|chr11 (78460297-78460548) | |
| 915-1169, gnl|Hg17|chr9 (128482522-128482773) | |
| 915-1169, gnl|Mm7|chr2 (30045484-30045738) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-372, gnl|bosTau2|chr11 (78450593-78450828) | |
| 137-372, gnl|canFam2|chr9 (58296840-58296689) | |
| 137-372, gnl|dasNov1|scaffold_3083 (6139-5988) | |
| 137-372, gnl|fr1|chrUn (200500690-200500844) | |
| 137-372, gnl|galGal2|chr17 (5564742-5564591) | |
| 137-372, gnl|hg17|chr9 (128476521-128476672) | |
| 137-372, gnl|Hg17|chr9 (128476521-128476756) | |
| 137-372, gnl|loxAfr1|scaffold_3413 (16573-16422) | |
| 137-372, gnl|mm7|chr2 (30039712-30039863) | |
| 137-372, gnl|Mm7|chr2 (30039712-30039947) | |
| 137-372, gnl|monDom2|scaffold_51 (3169393-3169544) | |
| 137-372, gnl|oryCun1|scaffold_199136 (10228-10380) | |
| 137-372, gnl|panTro1|chr11 (113313683-113313834) | |
| 137-372, gnl|rheMac2|chr15 (10223831-10223680) | |
| 137-372, gnl|rn3|chr3 (9022958-9023109) | |
| 137-372, gnl|tetNig1|chrUn_random (87511838-87511987) | |
| 137-372, gnl|xenTro1|scaffold_82 (260945-260794) | |
| 635-840, gnl|bosTau2|chr11 (78452270-78452476) | |
| 635-840, gnl|Hg17|chr9 (128478102-128478308) | |
| 635-840, gnl|Mm7|chr2 (30041095-30041305) | |
| 915-1169, gnl|bosTau2|chr11 (78460297-78460548) | |
| 915-1169, gnl|Hg17|chr9 (128482522-128482773) | |
| 915-1169, gnl|Mm7|chr2 (30045484-30045738) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| eep (0.245128) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) | |
| spc (0.113366) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.245128) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) | |
| spc (0.113366) |