Non-Coding RNA Search

Ss1.1-Pig1-91F11.5

Sequence:


               
               CTTACCCCAGGAGCCACCCCTGCGCCCCTCCCGCCCTGCCCTCTCTGTTTCTGGGCGGCC
TGCTGCTTTTCCTTTCCTCTCCCACCCTGCCCAGCCCTGAGCTGCATGGACCGACCCCCA
CCCTGGGCAGCCAGGAAGGAACATGAATGGAGAATCACTGACCAACGCAAAAAAAGACTG
TGGGGGCCTCCCCCGGCCACCCGTTCACCTGCACCTCTTTCACGCAGGACAGACCACCCG
CCCTGTCCGCGTGGAGTGCCAACACCCTCCCTGCCCTGGGCCGAGCCCCCCCTTCCCCGG
GCCCGTAAGTGAGATTGCACATTAACTACTGTAAGAAGAGGAGCCGCACTGGGAAATGTG
AACCATGAGAATATCAGTGATACTGATGAGGAGAATAAACTAAACGCCTTTGTAACAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTACCCCAGGAGCCACCCCTGCGCCCCTCCCGCCCTGCCCTCTCTGTTTCTGGGCGGCC
TGCTGCTTTTCCTTTCCTCTCCCACCCTGCCCAGCCCTGAGCTGCATGGACCGACCCCCA
CCCTGGGCAGCCAGGAAGGAACATGAATGGAGAATCACTGACCAACGCAAAAAAAGACTG
TGGGGGCCTCCCCCGGCCACCCGTTCACCTGCACCTCTTTCACGCAGGACAGACCACCCG
CCCTGTCCGCGTGGAGTGCCAACACCCTCCCTGCCCTGGGCCGAGCCCCCCCTTCCCCGG
GCCCGTAAGTGAGATTGCACATTAACTACTGTAAGAAGAGGAGCCGCACTGGGAAATGTG
AACCATGAGAATATCAGTGATACTGATGAGGAGAATAAACTAAACGCCTTTGTAACAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               169-268, - strand, RNAz p=0.839144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               169-268, - strand, RNAz p=0.839144

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               188-281, - strand, RNAmicro p=0.927328

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               188-281, - strand, RNAmicro p=0.927328

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-417, gnl|bosTau2|chr7 (9333342-9333774)
               

               
               1-417, gnl|Hg17|chr19 (13112521-13112959)
               

               
               1-417, gnl|Mm7|chr8 (83255433-83255063)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-417, gnl|bosTau2|chr7 (9333342-9333774)
               

               
               1-417, gnl|Hg17|chr19 (13112521-13112959)
               

               
               1-417, gnl|Mm7|chr8 (83255433-83255063)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               lnt (0.142308)

	1-417, gnl\|bosTau2\|chr7 (9333342-9333774)
	1-417, gnl\|Hg17\|chr19 (13112521-13112959)
	1-417, gnl\|Mm7\|chr8 (83255433-83255063)