Non-Coding RNA Search

Ss1.1-Pig1-91J17.5.5

Sequence:


               
               GAACCTGCCGCTCACCTTCTTCTGCCGGGCCGAGCTGGACAGCGAGCCCGAGCGGGTGGC
GTCCGTCCTGGAGAAGCTGAAGGAGGACTGCAACAACGCCGACAACAAAGAGCGCAAATC
GTTCCAGAAGGAGCTCATGATGGCCTTGCTGAAGATGGACTGCCAGGGCCTGGTGGTCAG
ACTCATCCAGGACTTCGTGCTCCTGACCACGGCCGTGGAGGTGGCGCAGCGCTGGAGGGA
GCTGGCTGAGAAGCTCGCCAAGGTGTCCAAGCAGCAGATGGACGCGTACGAGTCCCCCCA
CCGGGACCGGAACGGGGTCGTGGACAGCGAGGCCATGTGGAAACCCGCGTATGACTTTCT
ACTCACCTGGAGCCACCAGATCGGGGACAGCTACCGCGACGTCATCCAGGAGCTGCACAC
GGGCCTGGACAAGATGAAAAACCCCATCACCAAGCGCTGGAAACACCTCACAGGGACGCT
CATCCTGGTGAACTCCCTGGACGTCCTCCGAGCAGCCGCCTTCAGTCCCATGGACCAGGA
CGACTATGTGATTTGAAGGGGTCCCTCCACCTCCTGCTGCTCACGGGGCGGGCCACTTGC
CCTCCGTCTGCCCTGGACGCCCCGCAGTCCTATGGAGCTGGGGGTGGACAGGGAGGGTCG
GCTGCTCCCTTAGATCCAGGGTCCCTCCCGGCTGGACCCGCACCCCGGACCAAGCACATG
CAACGCTCCACTCACCGCCTCTGTCACAGGGGAGGGGCCGTGGGAATTGCTACGGCAGGT
TGTTGCCAATCAAATAGCTTTCTATTTGTTAATTATACCTTGAGATTTAAAATCACTTTT
TTTTTAAAGTATGGGGGGCTAGGGGCCGATGAGAAAGGTGATACCTAATTTTTTAATGGA
CCATAAAGATTTAAAAAAAAAAGAACACTTCATAGGGGCAGATGCTGTTGAGGTTTTTAT
GTTCTCGAAAGACCTTTTTAAATTATGTTCCAGATGTATATATGTATTTAAGGGTCGTGG
GAGCATTTCTAATTGCCAGGCACACTCGGCATTTCAACACTGAGCTCAGAGAGACACTCG
TTCAGGCGTTGGGCCGTCTGGGGTCTGTACTGAAAACGAAGTCTCTTTTAAAAAAAACAC
TGTAACGATTACCCAAGCAAAATGAATGTTTTCTGAAAACATTTCCCGGGCCTGGCTTTC
CTCGTGTTTTTATTTACCTTCTGTACATCGGCCCCGTGTCGCAGGAAAGGATCAGCCACA
GCACAGGGGAGGCTTTTTTGAGCTTTAGCGGCCAGAGGGAAATCCAGTTTTATGCCCTTG
AGACAAGCGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCTGCCGCTCACCTTCTTCTGCCGGGCCGAGCTGGACAGCGAGCCCGAGCGGGTGGC
GTCCGTCCTGGAGAAGCTGAAGGAGGACTGCAACAACGCCGACAACAAAGAGCGCAAATC
GTTCCAGAAGGAGCTCATGATGGCCTTGCTGAAGATGGACTGCCAGGGCCTGGTGGTCAG
ACTCATCCAGGACTTCGTGCTCCTGACCACGGCCGTGGAGGTGGCGCAGCGCTGGAGGGA
GCTGGCTGAGAAGCTCGCCAAGGTGTCCAAGCAGCAGATGGACGCGTACGAGTCCCCCCA
CCGGGACCGGAACGGGGTCGTGGACAGCGAGGCCATGTGGAAACCCGCGTATGACTTTCT
ACTCACCTGGAGCCACCAGATCGGGGACAGCTACCGCGACGTCATCCAGGAGCTGCACAC
GGGCCTGGACAAGATGAAAAACCCCATCACCAAGCGCTGGAAACACCTCACAGGGACGCT
CATCCTGGTGAACTCCCTGGACGTCCTCCGAGCAGCCGCCTTCAGTCCCATGGACCAGGA
CGACTATGTGATTTGAAGGGGTCCCTCCACCTCCTGCTGCTCACGGGGCGGGCCACTTGC
CCTCCGTCTGCCCTGGACGCCCCGCAGTCCTATGGAGCTGGGGGTGGACAGGGAGGGTCG
GCTGCTCCCTTAGATCCAGGGTCCCTCCCGGCTGGACCCGCACCCCGGACCAAGCACATG
CAACGCTCCACTCACCGCCTCTGTCACAGGGGAGGGGCCGTGGGAATTGCTACGGCAGGT
TGTTGCCAATCAAATAGCTTTCTATTTGTTAATTATACCTTGAGATTTAAAATCACTTTT
TTTTTAAAGTATGGGGGGCTAGGGGCCGATGAGAAAGGTGATACCTAATTTTTTAATGGA
CCATAAAGATTTAAAAAAAAAAGAACACTTCATAGGGGCAGATGCTGTTGAGGTTTTTAT
GTTCTCGAAAGACCTTTTTAAATTATGTTCCAGATGTATATATGTATTTAAGGGTCGTGG
GAGCATTTCTAATTGCCAGGCACACTCGGCATTTCAACACTGAGCTCAGAGAGACACTCG
TTCAGGCGTTGGGCCGTCTGGGGTCTGTACTGAAAACGAAGTCTCTTTTAAAAAAAACAC
TGTAACGATTACCCAAGCAAAATGAATGTTTTCTGAAAACATTTCCCGGGCCTGGCTTTC
CTCGTGTTTTTATTTACCTTCTGTACATCGGCCCCGTGTCGCAGGAAAGGATCAGCCACA
GCACAGGGGAGGCTTTTTTGAGCTTTAGCGGCCAGAGGGAAATCCAGTTTTATGCCCTTG
AGACAAGCGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53QD0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53QD0_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-143, gnl|bosTau2|chr3 (81131557-81131417)
               

               
               3-143, gnl|Hg17|chr2 (235733752-235733892)
               

               
               3-143, gnl|Mm7|chr1 (89050544-89050684)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-143, gnl|bosTau2|chr3 (81131557-81131417)
               

               
               3-143, gnl|Hg17|chr2 (235733752-235733892)
               

               
               3-143, gnl|Mm7|chr1 (89050544-89050684)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	3-143, gnl\|bosTau2\|chr3 (81131557-81131417)
	3-143, gnl\|Hg17\|chr2 (235733752-235733892)
	3-143, gnl\|Mm7\|chr1 (89050544-89050684)