Non-Coding RNA Search

Ss1.1-Pig1-91M08.5

Sequence:


               
               AAAACACCATTCCACCCCACTCATCGTCTGTGCTCCTATGTTCAAACTTTCCCCACAGTT
CCCCAATGAAGAAGATTCATTTCACAAATTTGTGGCCCCTGAAGAAGTCTTGCCTTTCAC
AGAAGGGGACATTCTGGAGAAGGTCAGTGTTCACTGCCCCGTGTTTGACTACGTCCCCCC
AGAGCTCATTACCCTCTTTATCTCCAACATTGGGGGGAATGCGCCGTCCTACATCTACCG
CCTGATGAGTGAACTCTACCATCCCGACGATCACGTGCTATGACCAGCGCTCGTCCTAAG
CAGAAGCTGCTTAGGCAAACACACAATGGAAAGGAGACTCCGGTGCTACGGCTGGAACGC
ATCTTCCTTGTCATGGGGGAGTGAGCTAGAGTCAACCTGAGAAAACTTGATACTGTTTCC
TGCCATTTTAGTCATCCCGTAACCAGGGCCCACATCCAGGACTGTTTTGCCTTTCGGCTC
TTAACAGAGCAGCAGGGCTTGACCTATTGATTTTGGAGCCTCTTACTGACTCGAGGCGTC
TGTTTCAGGAACTTAAACTTTCCGGCTCAGTGGAGTGTTACATATAACACTGAAGACCTT
GCTGGGCTGCAGGTTTTTGCTCACAACTGACCACCACACCTTTTCCGAGGCTGTGCCAAT
AAAAGCTGCTCGAAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACACCATTCCACCCCACTCATCGTCTGTGCTCCTATGTTCAAACTTTCCCCACAGTT
CCCCAATGAAGAAGATTCATTTCACAAATTTGTGGCCCCTGAAGAAGTCTTGCCTTTCAC
AGAAGGGGACATTCTGGAGAAGGTCAGTGTTCACTGCCCCGTGTTTGACTACGTCCCCCC
AGAGCTCATTACCCTCTTTATCTCCAACATTGGGGGGAATGCGCCGTCCTACATCTACCG
CCTGATGAGTGAACTCTACCATCCCGACGATCACGTGCTATGACCAGCGCTCGTCCTAAG
CAGAAGCTGCTTAGGCAAACACACAATGGAAAGGAGACTCCGGTGCTACGGCTGGAACGC
ATCTTCCTTGTCATGGGGGAGTGAGCTAGAGTCAACCTGAGAAAACTTGATACTGTTTCC
TGCCATTTTAGTCATCCCGTAACCAGGGCCCACATCCAGGACTGTTTTGCCTTTCGGCTC
TTAACAGAGCAGCAGGGCTTGACCTATTGATTTTGGAGCCTCTTACTGACTCGAGGCGTC
TGTTTCAGGAACTTAAACTTTCCGGCTCAGTGGAGTGTTACATATAACACTGAAGACCTT
GCTGGGCTGCAGGTTTTTGCTCACAACTGACCACCACACCTTTTCCGAGGCTGTGCCAAT
AAAAGCTGCTCGAAGGCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               283-399, - strand, RNAz p=0.913413
               

               
               510-628, + strand, RNAz p=0.693114

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               283-399, - strand, RNAz p=0.913413
               

               
               510-628, + strand, RNAz p=0.693114

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_014239, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_014239, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               124-676, gnl|bosTau2|chr10 (56627543-56628095)
               

               
               124-676, gnl|Hg17|chr14 (74545485-74546042)
               

               
               124-676, gnl|Mm7|chr12 (83225839-83226329)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               124-676, gnl|bosTau2|chr10 (56627543-56628095)
               

               
               124-676, gnl|Hg17|chr14 (74545485-74546042)
               

               
               124-676, gnl|Mm7|chr12 (83225839-83226329)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               amn (0.417711)
               

               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               clu (0.119646)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cly (0.241284)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               kid (0.129735)
               

               
               clu (0.119646)

	283-399, - strand, RNAz p=0.913413
	510-628, + strand, RNAz p=0.693114

	124-676, gnl\|bosTau2\|chr10 (56627543-56628095)
	124-676, gnl\|Hg17\|chr14 (74545485-74546042)
	124-676, gnl\|Mm7\|chr12 (83225839-83226329)

	amn (0.417711)
	cly (0.241284)
	fcc (0.197785)
	nlu (0.191681)
	ton (0.1755)
	cut (0.169924)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	che (0.136314)
	ssp (0.13552)
	kid (0.129735)
	clu (0.119646)