Non-Coding RNA Search

Ss1.1-Pig1-91O19.5

Sequence:


               
               GTGGCCTGAAGCCAGCAGCTCCTGTGGGAGAGCACTTCTGGAAGGGAGCAGGAACGGGCT
GGGTGGCCCCCGGGGTGCGGCTCCTGAAGGAGACGGCGCGGCGCCCGCGGACGAGCCCCC
TCCGGCCCCCTCCAGCCGCAGCTCCAGCACCGACGACTTCTGCTACCTGTTTGTGGTGGA
GCTGGAGCGGGGCCCCTCGGGGCTGGGCATGGGCCTGATCGACGGGTTGCACACGCCCCT
GGGCGCCCCCGGGCTCTACATCCAGACCCTGCTCCCGGGGAGCCCCGCGGCGTCCGATGG
GCGGCTGTCGCTGGGAGACCGCATCCTGGAGGTGAACGGCAGCAGCCTGCTGGGCGTCGG
CTACCTGAGAGCCGTGGACCTGATCCGACACGGGGGAAAGAAGATGCGGTTTCTGGTTGC
CAAGTCCGACGTGGAGACAGCCAAGAAAATCCGCTTCCGCACACCCCCTCCCTAGGCGGC
CTGCACCTGGGTTCCCAGGTTATGTCACCCTCTGCCCGGCTGCTCCGTGTGGGGCGCGAC
CTTCGGGGCCCTTGCCGTGGCCCTCGGCCTGTGGATAATGTACATCGTAGTGTGTATTTT
ATTTATACGACAGCTGGCACCAAGTTGTGATGTTTGTTACAGAGCTTTTATGTTGGGAGA
TTTTAATGGAGTATAGATTCAATAAACTCTCTTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGCCTGAAGCCAGCAGCTCCTGTGGGAGAGCACTTCTGGAAGGGAGCAGGAACGGGCT
GGGTGGCCCCCGGGGTGCGGCTCCTGAAGGAGACGGCGCGGCGCCCGCGGACGAGCCCCC
TCCGGCCCCCTCCAGCCGCAGCTCCAGCACCGACGACTTCTGCTACCTGTTTGTGGTGGA
GCTGGAGCGGGGCCCCTCGGGGCTGGGCATGGGCCTGATCGACGGGTTGCACACGCCCCT
GGGCGCCCCCGGGCTCTACATCCAGACCCTGCTCCCGGGGAGCCCCGCGGCGTCCGATGG
GCGGCTGTCGCTGGGAGACCGCATCCTGGAGGTGAACGGCAGCAGCCTGCTGGGCGTCGG
CTACCTGAGAGCCGTGGACCTGATCCGACACGGGGGAAAGAAGATGCGGTTTCTGGTTGC
CAAGTCCGACGTGGAGACAGCCAAGAAAATCCGCTTCCGCACACCCCCTCCCTAGGCGGC
CTGCACCTGGGTTCCCAGGTTATGTCACCCTCTGCCCGGCTGCTCCGTGTGGGGCGCGAC
CTTCGGGGCCCTTGCCGTGGCCCTCGGCCTGTGGATAATGTACATCGTAGTGTGTATTTT
ATTTATACGACAGCTGGCACCAAGTTGTGATGTTTGTTACAGAGCTTTTATGTTGGGAGA
TTTTAATGGAGTATAGATTCAATAAACTCTCTTTCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61886671|ref|XP_583189.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886671|ref|XP_583189.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               88-229, - strand, RNAz p=0.86449

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-229, - strand, RNAz p=0.86449

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               88-229, gnl|bosTau2|chr25 (37451922-37452063)
               

               
               88-229, gnl|Hg17|chr7 (4613184-4613043)
               

               
               88-229, gnl|Mm7|chr5 (141463689-141463551)
               


               
               368-696, gnl|bosTau2|chr25 (37452678-37452999)
               

               
               368-696, gnl|Hg17|chr7 (4612357-4611985)
               

               
               368-696, gnl|Mm7|chr5 (141462946-141462545)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-229, gnl|bosTau2|chr25 (37451922-37452063)
               

               
               88-229, gnl|Hg17|chr7 (4613184-4613043)
               

               
               88-229, gnl|Mm7|chr5 (141463689-141463551)
               


               
               368-696, gnl|bosTau2|chr25 (37452678-37452999)
               

               
               368-696, gnl|Hg17|chr7 (4612357-4611985)
               

               
               368-696, gnl|Mm7|chr5 (141462946-141462545)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	88-229, gnl\|bosTau2\|chr25 (37451922-37452063)
	88-229, gnl\|Hg17\|chr7 (4613184-4613043)
	88-229, gnl\|Mm7\|chr5 (141463689-141463551)

	368-696, gnl\|bosTau2\|chr25 (37452678-37452999)
	368-696, gnl\|Hg17\|chr7 (4612357-4611985)
	368-696, gnl\|Mm7\|chr5 (141462946-141462545)