Non-Coding RNA Search

Ss1.1-Pig1-92N11.5

Sequence:


               
               GGAGCCATGGCCCTCCTCCACCAGGCATGCCCCCCCCAGCCTGGCGTCAGCCCTCTCTCC
TGGCTCCTCCGGGGCCCCCAAACTGGCTGGGACCCCCAGCACAGAGTGGGACACCCCGTG
GTGGAGCCCTGCTGCTGCTAAGAAACAGCCCCCAGCCCCTGCGGCGAGCAGCCTCGGGGG
GCAGTGGCAGTGACAATGTGGGCCCACCTGCTGCTGCAGTGCCAGGGCCTCTGAGCCGCA
GCACCAGTGTTGCTTCCCACATCCTCAATGGTTCCTCCCACTTCTATTCTTGAAGTACAA
AGTGGATGAGCAGATGATCGAGGCAGGGGTGGGTGGAGCCTGATCCTGGAGGGCTATAAG
CCTGAGGTCCACCCAAGAGTGGGAGACAGGGGTGTTGGCTCCAGCTCCCCTCAGACCTCA
TCTCATGAGCTTCTTGGGCTGGCCAGTGGCCCAAGGCCACCTTGGGCATAGGTGCCTCAA
GGCTGACCAGGTGCCCCTGCCTCCCCACCATGGTGCCAGGGTCTCTCTCCATCACGGCCT
CGGGAAAGGAGGGAGATGATGTGTGTCAAATATTCATCTAGTCCCCTGGGGGAGGGGAAG
GGTGGGTCTAGATATATTATATAAAAGAGAACTATACTACCCTCTGGAATGGGGCCATGG
ACTGGGGACAGCAGGCCCCCACCCAGACCTGGGATGTGGCAGAGCAGGTCTGGAGCCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCATGGCCCTCCTCCACCAGGCATGCCCCCCCCAGCCTGGCGTCAGCCCTCTCTCC
TGGCTCCTCCGGGGCCCCCAAACTGGCTGGGACCCCCAGCACAGAGTGGGACACCCCGTG
GTGGAGCCCTGCTGCTGCTAAGAAACAGCCCCCAGCCCCTGCGGCGAGCAGCCTCGGGGG
GCAGTGGCAGTGACAATGTGGGCCCACCTGCTGCTGCAGTGCCAGGGCCTCTGAGCCGCA
GCACCAGTGTTGCTTCCCACATCCTCAATGGTTCCTCCCACTTCTATTCTTGAAGTACAA
AGTGGATGAGCAGATGATCGAGGCAGGGGTGGGTGGAGCCTGATCCTGGAGGGCTATAAG
CCTGAGGTCCACCCAAGAGTGGGAGACAGGGGTGTTGGCTCCAGCTCCCCTCAGACCTCA
TCTCATGAGCTTCTTGGGCTGGCCAGTGGCCCAAGGCCACCTTGGGCATAGGTGCCTCAA
GGCTGACCAGGTGCCCCTGCCTCCCCACCATGGTGCCAGGGTCTCTCTCCATCACGGCCT
CGGGAAAGGAGGGAGATGATGTGTGTCAAATATTCATCTAGTCCCCTGGGGGAGGGGAAG
GGTGGGTCTAGATATATTATATAAAAGAGAACTATACTACCCTCTGGAATGGGGCCATGG
ACTGGGGACAGCAGGCCCCCACCCAGACCTGGGATGTGGCAGAGCAGGTCTGGAGCCTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-199, - strand, RNAz p=0.959662
               

               
               280-720, + strand, RNAz p=0.99586

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.959662
               

               
               280-720, + strand, RNAz p=0.99586

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               172-266, - strand, RNAmicro p=0.963095
               

               
               430-532, - strand, RNAmicro p=0.962937
               

               
               43-139, + strand, RNAmicro p=0.948372
               

               
               448-521, + strand, RNAmicro p=0.937717

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               172-266, - strand, RNAmicro p=0.963095
               

               
               430-532, - strand, RNAmicro p=0.962937
               

               
               43-139, + strand, RNAmicro p=0.948372
               

               
               448-521, + strand, RNAmicro p=0.937717

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004783, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004783, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr25 (25342056-25342774)
               

               
               1-720, gnl|Hg17|chr16 (29910098-29910794)
               

               
               1-720, gnl|Mm7|chr7 (122963244-122962525)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr25 (25342056-25342774)
               

               
               1-720, gnl|Hg17|chr16 (29910098-29910794)
               

               
               1-720, gnl|Mm7|chr7 (122963244-122962525)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fcc (0.197785)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               ebs (0.118301)

	1-199, - strand, RNAz p=0.959662
	280-720, + strand, RNAz p=0.99586

	172-266, - strand, RNAmicro p=0.963095
	430-532, - strand, RNAmicro p=0.962937
	43-139, + strand, RNAmicro p=0.948372
	448-521, + strand, RNAmicro p=0.937717

	1-720, gnl\|bosTau2\|chr25 (25342056-25342774)
	1-720, gnl\|Hg17\|chr16 (29910098-29910794)
	1-720, gnl\|Mm7\|chr7 (122963244-122962525)