Ss1.1-Pig1-93A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAAATTCTCTGCCATGCATGAGTTCCAGAACCTCCATGCTCAGAGCAAGGCTCGAAT CCAGGAGTTTGTGCGGGGCCATTTCTATGGGCACTTGGACTTCAACTTGGACAAGACCTT GTACTTCTTTATCGCGGGGCGCTATGAGTTCTCCAACAAGGGGGCTGACGTTTTCCTGGA GGCTTTGGCCCGGCTCAACTATCTGCTCAGAGTGAACGGCAGCGAGCAGACAGTGGTTGC TTTCTTCATCATGCCGGCCCGGACCAACAATTTCAATGTGGAAACCCTTAAGGGCCAAGC CGTGCGCAAGCAGCTTTGGGATACGGCCAACACGGTGAAGGAGAAGTTTGGGAGGAAGCT TTATGAATCCTTGCTGGTGGGAAGCCTCCCAGACATGAACAAGATGCTGGACAAGGAGGA TTTCACCATGATGAAGAGAGCCATCTTTGCCACGCAGCGGCAGTCGTTCCCCCCTGTGTG CACCCACAATATGCTGGATGACTCCTCGGACCCTATCTTGACCACTATCCGGAGAATTGG CCTCTTCAACAGTAGTGCCGACAGGGTCAAGGTAATTTTTCACCCGGAGTTCCTCTCCTC CACGAGCCCCCTGCTCCCCGTGGACTACGAGGAATTTGTCCGTGGCTGCCACCTTGGCGT CTTTCCCTCCTATTACGAGCCTTGGGGCTACACGCCAGCTGAATGCACGGTTATGGGTAT CCCCAGTATCTCCACCAACCTCTCCGGCTTCGGCTGCTTCATGGAGGAACACATCGCAGA CCCCTCGGCTTACGGCATCTACATTCTGGACCGGCGGTTCCGCAGCCTGGATGATTCCTG CTCGCAGCTCACCTCCTTCCTCTACAGCTTCTGCCAGCAGAGTCGGCGGCAGCGCATTAT GGGGGCAGATTTGACTCCAGCCTTCTGATGCCCGCTCTCCTCTCTCCCTGCCCCCAAGTA CTACATGTCTGCACGCCACATGGCACTGGCCAAGGCCTTTCCAGAACACTTCACCTACGA GCCCCACGAAGCTGACGCAACCCAGGGCTACCGCTACCCACGGCCAGCATCAGTGCCACC ATCGCCTTCGCTGTCGCGCCATTCGAGTCCACACCAGAGTGAGGATGAGGAGGAACCGCG GGATGGACCACCTGATGAAGACGGCGAGCGCTATGACGAGGACGAGGAGGCCGCCAAGGA TCGGCGCAATATCCGCGCCCCCGAGTGGCCTCGACGCGCCTCTTGCACCTCTTCCACTAG CGGGAGCAAGCGCGGCTCCGTGGACACAGGGCCATCCAGCTCACTCAGCACCCCCAGCGA GCCCCTCAGCCCCGCCAGCTCCCTGGGAGAGGAGCGCAACTAAAACCCCAGCCCCACACT CCCAGCCAGCCTTGCTTCCCTTATCCAGAGGGTGGCTGCAGAATGGCGCTGTTTCTAAAC TCCACTCCAGATCCCCAACTCTCTGTGGGGTCCACGGCCCCACCACCTCCGCCATACACT CCAGCCCCTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAAATTCTCTGCCATGCATGAGTTCCAGAACCTCCATGCTCAGAGCAAGGCTCGAAT CCAGGAGTTTGTGCGGGGCCATTTCTATGGGCACTTGGACTTCAACTTGGACAAGACCTT GTACTTCTTTATCGCGGGGCGCTATGAGTTCTCCAACAAGGGGGCTGACGTTTTCCTGGA GGCTTTGGCCCGGCTCAACTATCTGCTCAGAGTGAACGGCAGCGAGCAGACAGTGGTTGC TTTCTTCATCATGCCGGCCCGGACCAACAATTTCAATGTGGAAACCCTTAAGGGCCAAGC CGTGCGCAAGCAGCTTTGGGATACGGCCAACACGGTGAAGGAGAAGTTTGGGAGGAAGCT TTATGAATCCTTGCTGGTGGGAAGCCTCCCAGACATGAACAAGATGCTGGACAAGGAGGA TTTCACCATGATGAAGAGAGCCATCTTTGCCACGCAGCGGCAGTCGTTCCCCCCTGTGTG CACCCACAATATGCTGGATGACTCCTCGGACCCTATCTTGACCACTATCCGGAGAATTGG CCTCTTCAACAGTAGTGCCGACAGGGTCAAGGTAATTTTTCACCCGGAGTTCCTCTCCTC CACGAGCCCCCTGCTCCCCGTGGACTACGAGGAATTTGTCCGTGGCTGCCACCTTGGCGT CTTTCCCTCCTATTACGAGCCTTGGGGCTACACGCCAGCTGAATGCACGGTTATGGGTAT CCCCAGTATCTCCACCAACCTCTCCGGCTTCGGCTGCTTCATGGAGGAACACATCGCAGA CCCCTCGGCTTACGGCATCTACATTCTGGACCGGCGGTTCCGCAGCCTGGATGATTCCTG CTCGCAGCTCACCTCCTTCCTCTACAGCTTCTGCCAGCAGAGTCGGCGGCAGCGCATTAT GGGGGCAGATTTGACTCCAGCCTTCTGATGCCCGCTCTCCTCTCTCCCTGCCCCCAAGTA CTACATGTCTGCACGCCACATGGCACTGGCCAAGGCCTTTCCAGAACACTTCACCTACGA GCCCCACGAAGCTGACGCAACCCAGGGCTACCGCTACCCACGGCCAGCATCAGTGCCACC ATCGCCTTCGCTGTCGCGCCATTCGAGTCCACACCAGAGTGAGGATGAGGAGGAACCGCG GGATGGACCACCTGATGAAGACGGCGAGCGCTATGACGAGGACGAGGAGGCCGCCAAGGA TCGGCGCAATATCCGCGCCCCCGAGTGGCCTCGACGCGCCTCTTGCACCTCTTCCACTAG CGGGAGCAAGCGCGGCTCCGTGGACACAGGGCCATCCAGCTCACTCAGCACCCCCAGCGA GCCCCTCAGCCCCGCCAGCTCCCTGGGAGAGGAGCGCAACTAAAACCCCAGCCCCACACT CCCAGCCAGCCTTGCTTCCCTTATCCAGAGGGTGGCTGCAGAATGGCGCTGTTTCTAAAC TCCACTCCAGATCCCCAACTCTCTGTGGGGTCCACGGCCCCACCACCTCCGCCATACACT CCAGCCCCTCTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 570-1380, - strand, RNAz p=0.872007 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 570-1380, - strand, RNAz p=0.872007 |
| Aligned organism(s): 71 entry(ies) | More info |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
| 83-213, gnl|bosTau2|chr18 (48145116-48144986) | |
| 83-213, gnl|canFam2|chr1 (110295676-110295525) | |
| 83-213, gnl|danRer3|chr3 (6649510-6649374) | |
| 83-213, gnl|dasNov1|scaffold_68237 (2601-2766) | |
| 83-213, gnl|echTel1|scaffold_249815 (1266-1407) | |
| 83-213, gnl|fr1|chrUn (165507526-165507377) | |
| 83-213, gnl|hg17|chr19 (54177320-54177471) | |
| 83-213, gnl|Hg17|chr19 (54177452-54177322) | |
| 83-213, gnl|loxAfr1|scaffold_44986 (9193-9042) | |
| 83-213, gnl|mm7|chr7 (41618770-41618615) | |
| 83-213, gnl|Mm7|chr7 (41618636-41618766) | |
| 83-213, gnl|monDom2|scaffold_105 (4197805-4197942) | |
| 83-213, gnl|oryCun1|scaffold_147034 (4044-4174) | |
| 83-213, gnl|panTro1|chr20 (51600898-51601049) | |
| 83-213, gnl|rheMac2|chr19 (55265301-55265452) | |
| 83-213, gnl|tetNig1|chrUn_random (40377912-40378058) | |
| 83-213, gnl|xenTro1|scaffold_250 (1346029-1346185) | |
| 570-707, gnl|bosTau2|chr18 (48140307-48140170) | |
| 570-707, gnl|canFam2|chr1 (110300341-110300240) | |
| 570-707, gnl|danRer3|chr3 (6652660-6652564) | |
| 570-707, gnl|dasNov1|scaffold_166239 (954-839) | |
| 570-707, gnl|echTel1|scaffold_202860 (9855-9972) | |
| 570-707, gnl|fr1|chrUn (165508812-165508715) | |
| 570-707, gnl|hg17|chr19 (54169260-54169375) | |
| 570-707, gnl|Hg17|chr19 (54169410-54169273) | |
| 570-707, gnl|mm7|chr7 (41624131-41624016) | |
| 570-707, gnl|Mm7|chr7 (41623979-41624116) | |
| 570-707, gnl|monDom2|scaffold_105 (4196738-4196863) | |
| 570-707, gnl|oryCun1|scaffold_209213 (79848-79735) | |
| 570-707, gnl|panTro1|chr20 (51592210-51592325) | |
| 570-707, gnl|rheMac2|chr19 (55258831-55258946) | |
| 570-707, gnl|rn3|chr1 (95998995-95998880) | |
| 570-707, gnl|tetNig1|chrUn_random (40376629-40376733) | |
| 570-707, gnl|xenTro1|scaffold_250 (1342009-1342145) | |
| 794-900, gnl|bosTau2|chr18 (48138276-48138170) | |
| 794-900, gnl|canFam2|chr1 (110302579-110302490) | |
| 794-900, gnl|danRer3|chr3 (6654494-6654405) | |
| 794-900, gnl|dasNov1|scaffold_166239 (4708-4619) | |
| 794-900, gnl|echTel1|scaffold_202860 (7390-7479) | |
| 794-900, gnl|fr1|chrUn (165509205-165509116) | |
| 794-900, gnl|hg17|chr19 (54165669-54165758) | |
| 794-900, gnl|Hg17|chr19 (54165779-54165673) | |
| 794-900, gnl|loxAfr1|scaffold_122996 (4675-4764) | |
| 794-900, gnl|mm7|chr7 (41627590-41627501) | |
| 794-900, gnl|Mm7|chr7 (41627478-41627584) | |
| 794-900, gnl|monDom2|scaffold_105 (4196411-4196500) | |
| 794-900, gnl|oryCun1|scaffold_209213 (86101-86012) | |
| 794-900, gnl|panTro1|chr20 (51588633-51588722) | |
| 794-900, gnl|rheMac2|chr19 (55254476-55254565) | |
| 794-900, gnl|rn3|chr1 (96001856-96001767) | |
| 794-900, gnl|tetNig1|chrUn_random (40376255-40376344) | |
| 794-900, gnl|xenTro1|scaffold_250 (1341651-1341740) | |
| 901-1038, gnl|bosTau2|chr18 (48137729-48137592) | |
| 901-1038, gnl|canFam2|chr1 (110303122-110303009) | |
| 901-1038, gnl|danRer3|chr3 (6654769-6654666) | |
| 901-1038, gnl|dasNov1|scaffold_27660 (361-252) | |
| 901-1038, gnl|echTel1|scaffold_279366 (38146-38245) | |
| 901-1038, gnl|fr1|chrUn (165509439-165509323) | |
| 901-1038, gnl|hg17|chr19 (54164827-54164943) | |
| 901-1038, gnl|Hg17|chr19 (54164977-54164845) | |
| 901-1038, gnl|mm7|chr7 (41630649-41630540) | |
| 901-1038, gnl|monDom2|scaffold_105 (4196161-4196271) | |
| 901-1038, gnl|oryCun1|scaffold_204032 (729-617) | |
| 901-1038, gnl|panTro1|chr20 (51587793-51587909) | |
| 901-1038, gnl|rheMac2|chr19 (55253306-55253422) | |
| 901-1038, gnl|rn3|chr1 (96004555-96004443) | |
| 901-1038, gnl|tetNig1|chrUn_random (40376024-40376126) | |
| 901-1038, gnl|xenTro1|scaffold_250 (1340668-1340762) | |
| 1040-1511, gnl|bosTau2|chr18 (48137411-48136925) | |
| 1040-1511, gnl|Hg17|chr19 (54164680-54164207) | |
| 1040-1511, gnl|Mm7|chr7 (41630769-41631253) |
| Aligned organism(s): 71 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-213, gnl|bosTau2|chr18 (48145116-48144986) | |
| 83-213, gnl|canFam2|chr1 (110295676-110295525) | |
| 83-213, gnl|danRer3|chr3 (6649510-6649374) | |
| 83-213, gnl|dasNov1|scaffold_68237 (2601-2766) | |
| 83-213, gnl|echTel1|scaffold_249815 (1266-1407) | |
| 83-213, gnl|fr1|chrUn (165507526-165507377) | |
| 83-213, gnl|hg17|chr19 (54177320-54177471) | |
| 83-213, gnl|Hg17|chr19 (54177452-54177322) | |
| 83-213, gnl|loxAfr1|scaffold_44986 (9193-9042) | |
| 83-213, gnl|mm7|chr7 (41618770-41618615) | |
| 83-213, gnl|Mm7|chr7 (41618636-41618766) | |
| 83-213, gnl|monDom2|scaffold_105 (4197805-4197942) | |
| 83-213, gnl|oryCun1|scaffold_147034 (4044-4174) | |
| 83-213, gnl|panTro1|chr20 (51600898-51601049) | |
| 83-213, gnl|rheMac2|chr19 (55265301-55265452) | |
| 83-213, gnl|tetNig1|chrUn_random (40377912-40378058) | |
| 83-213, gnl|xenTro1|scaffold_250 (1346029-1346185) | |
| 570-707, gnl|bosTau2|chr18 (48140307-48140170) | |
| 570-707, gnl|canFam2|chr1 (110300341-110300240) | |
| 570-707, gnl|danRer3|chr3 (6652660-6652564) | |
| 570-707, gnl|dasNov1|scaffold_166239 (954-839) | |
| 570-707, gnl|echTel1|scaffold_202860 (9855-9972) | |
| 570-707, gnl|fr1|chrUn (165508812-165508715) | |
| 570-707, gnl|hg17|chr19 (54169260-54169375) | |
| 570-707, gnl|Hg17|chr19 (54169410-54169273) | |
| 570-707, gnl|mm7|chr7 (41624131-41624016) | |
| 570-707, gnl|Mm7|chr7 (41623979-41624116) | |
| 570-707, gnl|monDom2|scaffold_105 (4196738-4196863) | |
| 570-707, gnl|oryCun1|scaffold_209213 (79848-79735) | |
| 570-707, gnl|panTro1|chr20 (51592210-51592325) | |
| 570-707, gnl|rheMac2|chr19 (55258831-55258946) | |
| 570-707, gnl|rn3|chr1 (95998995-95998880) | |
| 570-707, gnl|tetNig1|chrUn_random (40376629-40376733) | |
| 570-707, gnl|xenTro1|scaffold_250 (1342009-1342145) | |
| 794-900, gnl|bosTau2|chr18 (48138276-48138170) | |
| 794-900, gnl|canFam2|chr1 (110302579-110302490) | |
| 794-900, gnl|danRer3|chr3 (6654494-6654405) | |
| 794-900, gnl|dasNov1|scaffold_166239 (4708-4619) | |
| 794-900, gnl|echTel1|scaffold_202860 (7390-7479) | |
| 794-900, gnl|fr1|chrUn (165509205-165509116) | |
| 794-900, gnl|hg17|chr19 (54165669-54165758) | |
| 794-900, gnl|Hg17|chr19 (54165779-54165673) | |
| 794-900, gnl|loxAfr1|scaffold_122996 (4675-4764) | |
| 794-900, gnl|mm7|chr7 (41627590-41627501) | |
| 794-900, gnl|Mm7|chr7 (41627478-41627584) | |
| 794-900, gnl|monDom2|scaffold_105 (4196411-4196500) | |
| 794-900, gnl|oryCun1|scaffold_209213 (86101-86012) | |
| 794-900, gnl|panTro1|chr20 (51588633-51588722) | |
| 794-900, gnl|rheMac2|chr19 (55254476-55254565) | |
| 794-900, gnl|rn3|chr1 (96001856-96001767) | |
| 794-900, gnl|tetNig1|chrUn_random (40376255-40376344) | |
| 794-900, gnl|xenTro1|scaffold_250 (1341651-1341740) | |
| 901-1038, gnl|bosTau2|chr18 (48137729-48137592) | |
| 901-1038, gnl|canFam2|chr1 (110303122-110303009) | |
| 901-1038, gnl|danRer3|chr3 (6654769-6654666) | |
| 901-1038, gnl|dasNov1|scaffold_27660 (361-252) | |
| 901-1038, gnl|echTel1|scaffold_279366 (38146-38245) | |
| 901-1038, gnl|fr1|chrUn (165509439-165509323) | |
| 901-1038, gnl|hg17|chr19 (54164827-54164943) | |
| 901-1038, gnl|Hg17|chr19 (54164977-54164845) | |
| 901-1038, gnl|mm7|chr7 (41630649-41630540) | |
| 901-1038, gnl|monDom2|scaffold_105 (4196161-4196271) | |
| 901-1038, gnl|oryCun1|scaffold_204032 (729-617) | |
| 901-1038, gnl|panTro1|chr20 (51587793-51587909) | |
| 901-1038, gnl|rheMac2|chr19 (55253306-55253422) | |
| 901-1038, gnl|rn3|chr1 (96004555-96004443) | |
| 901-1038, gnl|tetNig1|chrUn_random (40376024-40376126) | |
| 901-1038, gnl|xenTro1|scaffold_250 (1340668-1340762) | |
| 1040-1511, gnl|bosTau2|chr18 (48137411-48136925) | |
| 1040-1511, gnl|Hg17|chr19 (54164680-54164207) | |
| 1040-1511, gnl|Mm7|chr7 (41630769-41631253) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mcp (0.170648) | |
| ese (0.126502) |