Non-Coding RNA Search

Ss1.1-Pig1-94A10.5

Sequence:


               
               GGCTAGACAGAGGGAGGTCAGGGAGTGGACCAGGGACCTCCAGGTGGGGGCCGAGGTGGC
GGGGGAACAGCACTCGCATTTGGTCCCTGTTCCCGCCCTTTCCCAGCTCCACCGCCTGGT
TTTCAGTCTCCGGCACAGCAAGGAAGAGCGGGAAGACCTGGATGCAGATGAGCTAGAAGC
TCCCACTGCAGCTCCTGTGCAGAACGGGTGCCCTGAGCACGCGCTGGAGATGGAGGGTAA
GGCATGGGCCAGGAGTTGGGGTGAGGGAGCTGGGGGAGTCGAGTTTCCCCAGACTAACTG
CAGAGCCTCGATTCCCCCCAGAGCCCCCATCCCCAACACCAGGACTGTTCCGCCAGTGTC
TGCTCTGGTTCTGTGGCATGAGCAGGACTGGGGCGGGCAGCCCCCCAGCCCCTACCCGGG
AGGAGATGGCTGCAGGGGCCAGGCGGCTGGACGATATCAGTGAGGACGCGAGCTGGGCCC
GCGTCGTCAACCTCAATGCCCTGCTCATGATGGCCGTGGCCACGTTCCTCTGGGGCTTTT
ATGCCTGAGGCCCACTGGGTGGGACACCGAGAGCCACAGCCCTGCGGGGAGGCGGGGTGG
GGAGACTGCCGTGGTGAGAAGGGCCTGGGGAAGGAGAGCTGGGGGGAAGGCCCTGGTACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTAGACAGAGGGAGGTCAGGGAGTGGACCAGGGACCTCCAGGTGGGGGCCGAGGTGGC
GGGGGAACAGCACTCGCATTTGGTCCCTGTTCCCGCCCTTTCCCAGCTCCACCGCCTGGT
TTTCAGTCTCCGGCACAGCAAGGAAGAGCGGGAAGACCTGGATGCAGATGAGCTAGAAGC
TCCCACTGCAGCTCCTGTGCAGAACGGGTGCCCTGAGCACGCGCTGGAGATGGAGGGTAA
GGCATGGGCCAGGAGTTGGGGTGAGGGAGCTGGGGGAGTCGAGTTTCCCCAGACTAACTG
CAGAGCCTCGATTCCCCCCAGAGCCCCCATCCCCAACACCAGGACTGTTCCGCCAGTGTC
TGCTCTGGTTCTGTGGCATGAGCAGGACTGGGGCGGGCAGCCCCCCAGCCCCTACCCGGG
AGGAGATGGCTGCAGGGGCCAGGCGGCTGGACGATATCAGTGAGGACGCGAGCTGGGCCC
GCGTCGTCAACCTCAATGCCCTGCTCATGATGGCCGTGGCCACGTTCCTCTGGGGCTTTT
ATGCCTGAGGCCCACTGGGTGGGACACCGAGAGCCACAGCCCTGCGGGGAGGCGGGGTGG
GGAGACTGCCGTGGTGAGAAGGGCCTGGGGAAGGAGAGCTGGGGGGAAGGCCCTGGTACC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               232-349, - strand, RNAz p=0.999447

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               232-349, - strand, RNAz p=0.999447

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               236-353, + strand, RNAmicro p=0.999993

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               236-353, + strand, RNAmicro p=0.999993

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK092580, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK092580, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               73-660, gnl|bosTau2|chr25 (23297524-23298110)
               

               
               73-660, gnl|Hg17|chr16 (31408893-31409470)
               

               
               73-660, gnl|Mm7|chr7 (124368274-124368876)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-660, gnl|bosTau2|chr25 (23297524-23298110)
               

               
               73-660, gnl|Hg17|chr16 (31408893-31409470)
               

               
               73-660, gnl|Mm7|chr7 (124368274-124368876)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cli (0.152812)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               cty (0.10408)

	73-660, gnl\|bosTau2\|chr25 (23297524-23298110)
	73-660, gnl\|Hg17\|chr16 (31408893-31409470)
	73-660, gnl\|Mm7\|chr7 (124368274-124368876)