Non-Coding RNA Search

Ss1.1-Pig1-94J04.5

Sequence:


               
               TAAAATATTATTTTAAAAGGCATTAGTATATATAATATGATTAATTTGGATGGTTGCATC
TGTGTAGAAGTAATGCGGGTATCAGTCTTTTATGAAGTAAATAAGTGCTCTTAAAACCCG
TATCTTATCCTGCCAAAGTCTGAAATGTGCTCATTGGTGATTTACTGGCATATTTAAAAT
TGTACTTAGTTGACTTATCCCTCTTTTAAAAACATTTAGCCTGCCTTTGGAGGGCGATGG
TTGGAGGGAGTTACATCTCACTAGTTAATTATTTTATCTAATTTTTAACCTTTATAGACC
TGGAGTTTTCTTGGTGGTGTTGATAGTGGTGGTGTTTTTTGTTAAGCTGAATAAAACAGA
CTAGCTTGGTTGGAGCCTCCTCCACTTTTTCTTTTTAGGGATGCAAGTATTGTCTGGTGG
GGGAGGGGGACTTTAAAGTAAACTTGGCTAAAAAGTGAGTATCTAAGTAGCTTTGCTGGT
AAAGTAATAAGAATTAGTATTCTCCAGAGTCTAAGAAAATGTGAATGTTTTGCACTTTGT
CTATTATTACTGTAAGTTTAAAAATCTTTTGGGTAATGTTACTTCGCCATTCTCTCGGTT
AAAGGCTATCATTGAAGCTCTGTTTATTGGAGAAAATCTTTGGTCGTTTCCATTTCTTGC
TTCTTTACTGTGGTTTGTTTCAAGCTTAGTTAAAATTGTGTATTAGATTGAGTTCTAGGA
ATTAAAAAGTCTAGTTAGGATAAGAAGTTCTTTATTTTAAAGGTTTTAACAAATGAAGTA
TTCTTAAGATGAAATCTATTTGATTAACTGTATTTTACCATAAATTAGATTGGGGGGAGC
AGCCTATATTTTTGTGTATGTATTTCTTAAATGAACGTGTAAGCTACAGGAATATTTGTT
TTGTTGTGAGCCTGGTAATGTTTCATGGTCCTTGTAATGTAAATGGTTTTTTCCAGTTCA
CATACCATTTGTTGTGAAGTGATATTAGAGCACCAGTTGCATTGTGAAAATGCTTGGCTG
GGAATACCTCTTGGCATTTTGTCTTTATCTCATCACTTAATTTAAAAATCCAGCACTTGA
TAATATAACTGACAGAAATGATTGTACCAGCTGATAAAGTAACAGAAATGAAGGAAAGTA
AAATATTCCTTCCTATAATGGCGTGAGTTCATTTTTCTTCTTAAGTGGCATCTATGTAAA
TTAGAAATACTATATATTAAAATGGATAGATTTAAATGTTTCTCTTGTGTTCTTAGATTA
TGAGGAAGATCAGAGTATTAGTAATGGTTTTTACAGTTTTGAAATTTGATAAGTCGAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAAATATTATTTTAAAAGGCATTAGTATATATAATATGATTAATTTGGATGGTTGCATC
TGTGTAGAAGTAATGCGGGTATCAGTCTTTTATGAAGTAAATAAGTGCTCTTAAAACCCG
TATCTTATCCTGCCAAAGTCTGAAATGTGCTCATTGGTGATTTACTGGCATATTTAAAAT
TGTACTTAGTTGACTTATCCCTCTTTTAAAAACATTTAGCCTGCCTTTGGAGGGCGATGG
TTGGAGGGAGTTACATCTCACTAGTTAATTATTTTATCTAATTTTTAACCTTTATAGACC
TGGAGTTTTCTTGGTGGTGTTGATAGTGGTGGTGTTTTTTGTTAAGCTGAATAAAACAGA
CTAGCTTGGTTGGAGCCTCCTCCACTTTTTCTTTTTAGGGATGCAAGTATTGTCTGGTGG
GGGAGGGGGACTTTAAAGTAAACTTGGCTAAAAAGTGAGTATCTAAGTAGCTTTGCTGGT
AAAGTAATAAGAATTAGTATTCTCCAGAGTCTAAGAAAATGTGAATGTTTTGCACTTTGT
CTATTATTACTGTAAGTTTAAAAATCTTTTGGGTAATGTTACTTCGCCATTCTCTCGGTT
AAAGGCTATCATTGAAGCTCTGTTTATTGGAGAAAATCTTTGGTCGTTTCCATTTCTTGC
TTCTTTACTGTGGTTTGTTTCAAGCTTAGTTAAAATTGTGTATTAGATTGAGTTCTAGGA
ATTAAAAAGTCTAGTTAGGATAAGAAGTTCTTTATTTTAAAGGTTTTAACAAATGAAGTA
TTCTTAAGATGAAATCTATTTGATTAACTGTATTTTACCATAAATTAGATTGGGGGGAGC
AGCCTATATTTTTGTGTATGTATTTCTTAAATGAACGTGTAAGCTACAGGAATATTTGTT
TTGTTGTGAGCCTGGTAATGTTTCATGGTCCTTGTAATGTAAATGGTTTTTTCCAGTTCA
CATACCATTTGTTGTGAAGTGATATTAGAGCACCAGTTGCATTGTGAAAATGCTTGGCTG
GGAATACCTCTTGGCATTTTGTCTTTATCTCATCACTTAATTTAAAAATCCAGCACTTGA
TAATATAACTGACAGAAATGATTGTACCAGCTGATAAAGTAACAGAAATGAAGGAAAGTA
AAATATTCCTTCCTATAATGGCGTGAGTTCATTTTTCTTCTTAAGTGGCATCTATGTAAA
TTAGAAATACTATATATTAAAATGGATAGATTTAAATGTTTCTCTTGTGTTCTTAGATTA
TGAGGAAGATCAGAGTATTAGTAATGGTTTTTACAGTTTTGAAATTTGATAAGTCGAACA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               7-1315, gnl|bosTau2|chr28 (4400351-4399016)
               

               
               7-1315, gnl|Hg17|chr1 (232706633-232705322)
               

               
               7-1315, gnl|Mm7|chrUn_random (10123414-10122194)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1315, gnl|bosTau2|chr28 (4400351-4399016)
               

               
               7-1315, gnl|Hg17|chr1 (232706633-232705322)
               

               
               7-1315, gnl|Mm7|chrUn_random (10123414-10122194)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               csp (0.161186)
               

               
               liv (0.146284)
               

               
               sug (0.127291)
               

               
               med (0.116252)

	7-1315, gnl\|bosTau2\|chr28 (4400351-4399016)
	7-1315, gnl\|Hg17\|chr1 (232706633-232705322)
	7-1315, gnl\|Mm7\|chrUn_random (10123414-10122194)

	cty (0.20816)
	csp (0.161186)
	liv (0.146284)
	sug (0.127291)
	med (0.116252)