Non-Coding RNA Search

Ss1.1-Pig1-94N01.5

Sequence:


               
               TTTTTTCCTCCTGCCTTCTTGGCTTCATCCCTGCGGAAGGGGCAGTGGTCAGCAGGGGAA
GCCCCTGTTCCCGCACAGCCCTCCTGGAAACTGTTGCAAAATTCCCAGCCGCCTCATGGC
AAATGCCCAAAGCATGCTCCGCGCCCAAGCGGGGGCAGCTGCTAATGAGACGCTTGATGC
AACTGCAGCCAGGGCGGGAGAGGGCCTGGGGAGCTGGGGGGAGGGGTGCCAGGCTCCAGC
CCCAGCTGGTTTCTCTCTGGCGCCTTCTGAACCCGTCTCGGCAGGTCTACAACACCTGGG
CAGAGGGGCTCAGAGCCCAGGGGAGGCCAGGCCTCTCCCTCAGCATTCTGCCTGTGTTCT
CAAGGGATTGCTCTCCCAGGGGTGCTGGACGCCCTGGGTCCAGATGAGGCCTGGATGCCC
ACCTGACAGCTGGCCCCCAAGTCCTGGCGGGAGGGGGTGGGGCCCAGGCAGCTAGTCGCG
GTGCTGTTCTCCCTGCATGCCCTCTGTGGCTGGGGCTGCCACCCCACCCGGCCTGAATCT
GTCTCGACCTGCAGGAACACACAGGCGGCGCCAGGCATTACCTCAGAGCAAACTGCAGTT
GCTGGCTTCGCTTCTGGGCAAGGAGGAGCAGGCCAGAGCCCCTTTCGCTTCCTTTTCCTG
CCCATGCCGCTTCTAGAAGCTGGCCGCAGGTTGCCAAGAGGTGACATGAAAGAGGAGCAA
ACTCATTGACCTCTACCTCTCCTGCATTCCTCCAAGCTGGGGAGGATCTAAGTGCTGCTC
CAGAGGGCGGCGTGCAGGTGCCTCCACGCCTGCGCGCTCGGGGGCCTTGCTGTGGGACAA
CGGAGCAGGGCTCAGCAGTGAATTGGGCCTGGACTTTTCGATTCAGAAAATGTTGGAGCA
TCTGGGAGTCACAGGCACTCCCTCCTTGATGCCCTGGGGTGGTCTCCTCGTGGTCCCCCA
AGACAATAGCGAAATAAACGGGGTGTTTGCGTGGAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTCCTCCTGCCTTCTTGGCTTCATCCCTGCGGAAGGGGCAGTGGTCAGCAGGGGAA
GCCCCTGTTCCCGCACAGCCCTCCTGGAAACTGTTGCAAAATTCCCAGCCGCCTCATGGC
AAATGCCCAAAGCATGCTCCGCGCCCAAGCGGGGGCAGCTGCTAATGAGACGCTTGATGC
AACTGCAGCCAGGGCGGGAGAGGGCCTGGGGAGCTGGGGGGAGGGGTGCCAGGCTCCAGC
CCCAGCTGGTTTCTCTCTGGCGCCTTCTGAACCCGTCTCGGCAGGTCTACAACACCTGGG
CAGAGGGGCTCAGAGCCCAGGGGAGGCCAGGCCTCTCCCTCAGCATTCTGCCTGTGTTCT
CAAGGGATTGCTCTCCCAGGGGTGCTGGACGCCCTGGGTCCAGATGAGGCCTGGATGCCC
ACCTGACAGCTGGCCCCCAAGTCCTGGCGGGAGGGGGTGGGGCCCAGGCAGCTAGTCGCG
GTGCTGTTCTCCCTGCATGCCCTCTGTGGCTGGGGCTGCCACCCCACCCGGCCTGAATCT
GTCTCGACCTGCAGGAACACACAGGCGGCGCCAGGCATTACCTCAGAGCAAACTGCAGTT
GCTGGCTTCGCTTCTGGGCAAGGAGGAGCAGGCCAGAGCCCCTTTCGCTTCCTTTTCCTG
CCCATGCCGCTTCTAGAAGCTGGCCGCAGGTTGCCAAGAGGTGACATGAAAGAGGAGCAA
ACTCATTGACCTCTACCTCTCCTGCATTCCTCCAAGCTGGGGAGGATCTAAGTGCTGCTC
CAGAGGGCGGCGTGCAGGTGCCTCCACGCCTGCGCGCTCGGGGGCCTTGCTGTGGGACAA
CGGAGCAGGGCTCAGCAGTGAATTGGGCCTGGACTTTTCGATTCAGAAAATGTTGGAGCA
TCTGGGAGTCACAGGCACTCCCTCCTTGATGCCCTGGGGTGGTCTCCTCGTGGTCCCCCA
AGACAATAGCGAAATAAACGGGGTGTTTGCGTGGAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               76-426, - strand, RNAz p=0.886334

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-426, - strand, RNAz p=0.886334

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               193-266, + strand, RNAmicro p=0.998591
               

               
               117-235, - strand, RNAmicro p=0.997485

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               193-266, + strand, RNAmicro p=0.998591
               

               
               117-235, - strand, RNAmicro p=0.997485

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-444, gnl|bosTau2|chr8 (31487111-31486666)
               

               
               2-444, gnl|Hg17|chr8 (22016858-22017282)
               

               
               2-444, gnl|Mm7|chr14 (65229098-65228682)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-444, gnl|bosTau2|chr8 (31487111-31486666)
               

               
               2-444, gnl|Hg17|chr8 (22016858-22017282)
               

               
               2-444, gnl|Mm7|chr14 (65229098-65228682)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

	193-266, + strand, RNAmicro p=0.998591
	117-235, - strand, RNAmicro p=0.997485

	2-444, gnl\|bosTau2\|chr8 (31487111-31486666)
	2-444, gnl\|Hg17\|chr8 (22016858-22017282)
	2-444, gnl\|Mm7\|chr14 (65229098-65228682)