Non-Coding RNA Search

Ss1.1-Pig1-94P09.5

Sequence:


               
               GTGAACATCATCACCATCATCAGGCTAATGGAGATGCTGCATCGCCAGTCCTTACCTGGG
GAATTGGGGGCTGGTGGTATCACTCTGAAACTTCCTTGTTCTTCTCTCGTGGAAGTCCCT
CTGCTGAGCAGGGAGGCAGGGTCCTAAGGACTGTTTTGTGCCAGGGACTTGGTAGATGTG
GTCCCTATGGGGCTGATGTCAGGAGTTTTCCTTGCCAATCTTGGTTTGGAGGCCACAATC
CTGCCTCTGAATTCTTCCTCAGAGAATGAGGCCAACTTTTGCCCAAATCTGTAACCGTAG
CTTGAATATGCTTCTCAAAGATACAGATTTTTAGGCTGGACCCCAAACCTTAATCCAGGT
CTGGATCCTAGACACAGGAGTCTACATTTTTAATGCCACCCCAGTTTACTCTTCTGATGC
AGGTTTTCCCTGTGCTACATGTTGAGAAACCTTGGAGAAGGGTTTGAAAGTCCCAGAAGT
TGCAGGCTTAACTTTAGAGAGTCTCGGGTCCCCGCTCTGCAGTTGCCTGTGTTTTGGGAG
CAACTCCCACGACCAGGTCTCTGGAGCCCATGCCCGCAGCTTGCTGATCCTGAAACTGCA
CATAGTACCTGCTGAACAGCAACTGCATTCTCTGCTGATGACAGGCGATGAGGCCTGACT
GAATAAGCATCTTACCTTGGCCTCGGGGGACAGCAACCACAACCTGGCCCAACAGGAATC
CTTGGCACTGGGAGGGCCCATTGAGGTAAGTGCCTTATTAAGGTTTCCCACTTCCCTCTG
GAGCCCCCACTTCCCTACTCATGGGCCTCAGAGGACAGGCTTCTATCCTCTAGATGCTCT
GACATGCCCTGGCTACACCCTGACCTCTGCCAGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAACATCATCACCATCATCAGGCTAATGGAGATGCTGCATCGCCAGTCCTTACCTGGG
GAATTGGGGGCTGGTGGTATCACTCTGAAACTTCCTTGTTCTTCTCTCGTGGAAGTCCCT
CTGCTGAGCAGGGAGGCAGGGTCCTAAGGACTGTTTTGTGCCAGGGACTTGGTAGATGTG
GTCCCTATGGGGCTGATGTCAGGAGTTTTCCTTGCCAATCTTGGTTTGGAGGCCACAATC
CTGCCTCTGAATTCTTCCTCAGAGAATGAGGCCAACTTTTGCCCAAATCTGTAACCGTAG
CTTGAATATGCTTCTCAAAGATACAGATTTTTAGGCTGGACCCCAAACCTTAATCCAGGT
CTGGATCCTAGACACAGGAGTCTACATTTTTAATGCCACCCCAGTTTACTCTTCTGATGC
AGGTTTTCCCTGTGCTACATGTTGAGAAACCTTGGAGAAGGGTTTGAAAGTCCCAGAAGT
TGCAGGCTTAACTTTAGAGAGTCTCGGGTCCCCGCTCTGCAGTTGCCTGTGTTTTGGGAG
CAACTCCCACGACCAGGTCTCTGGAGCCCATGCCCGCAGCTTGCTGATCCTGAAACTGCA
CATAGTACCTGCTGAACAGCAACTGCATTCTCTGCTGATGACAGGCGATGAGGCCTGACT
GAATAAGCATCTTACCTTGGCCTCGGGGGACAGCAACCACAACCTGGCCCAACAGGAATC
CTTGGCACTGGGAGGGCCCATTGAGGTAAGTGCCTTATTAAGGTTTCCCACTTCCCTCTG
GAGCCCCCACTTCCCTACTCATGGGCCTCAGAGGACAGGCTTCTATCCTCTAGATGCTCT
GACATGCCCTGGCTACACCCTGACCTCTGCCAGTTG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               157-385, - strand, RNAz p=0.999567
               

               
               462-566, + strand, RNAz p=0.999268
               

               
               673-797, - strand, RNAz p=0.786135

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               157-385, - strand, RNAz p=0.999567
               

               
               462-566, + strand, RNAz p=0.999268
               

               
               673-797, - strand, RNAz p=0.786135

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               472-569, + strand, RNAmicro p=0.999926

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               472-569, + strand, RNAmicro p=0.999926

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               2-150, gnl|bosTau2|chr17 (30316367-30316509)
               

               
               2-150, gnl|canFam2|chr26 (11240307-11240540)
               

               
               2-150, gnl|dasNov1|scaffold_28274 (13357-13145)
               

               
               2-150, gnl|hg17|chr12 (109272004-109272216)
               

               
               2-150, gnl|Hg17|chr12 (109272135-109272009)
               

               
               2-150, gnl|monDom2|scaffold_97 (968924-968732)
               

               
               2-150, gnl|panTro1|chr10 (111868367-111868579)
               

               
               2-150, gnl|rheMac2|chr11 (111284155-111284377)
               


               
               157-797, gnl|bosTau2|chr17 (30316567-30317208)
               

               
               157-797, gnl|Hg17|chr12 (109271952-109271245)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-150, gnl|bosTau2|chr17 (30316367-30316509)
               

               
               2-150, gnl|canFam2|chr26 (11240307-11240540)
               

               
               2-150, gnl|dasNov1|scaffold_28274 (13357-13145)
               

               
               2-150, gnl|hg17|chr12 (109272004-109272216)
               

               
               2-150, gnl|Hg17|chr12 (109272135-109272009)
               

               
               2-150, gnl|monDom2|scaffold_97 (968924-968732)
               

               
               2-150, gnl|panTro1|chr10 (111868367-111868579)
               

               
               2-150, gnl|rheMac2|chr11 (111284155-111284377)
               


               
               157-797, gnl|bosTau2|chr17 (30316567-30317208)
               

               
               157-797, gnl|Hg17|chr12 (109271952-109271245)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	157-385, - strand, RNAz p=0.999567
	462-566, + strand, RNAz p=0.999268
	673-797, - strand, RNAz p=0.786135

	2-150, gnl\|bosTau2\|chr17 (30316367-30316509)
	2-150, gnl\|canFam2\|chr26 (11240307-11240540)
	2-150, gnl\|dasNov1\|scaffold_28274 (13357-13145)
	2-150, gnl\|hg17\|chr12 (109272004-109272216)
	2-150, gnl\|Hg17\|chr12 (109272135-109272009)
	2-150, gnl\|monDom2\|scaffold_97 (968924-968732)
	2-150, gnl\|panTro1\|chr10 (111868367-111868579)
	2-150, gnl\|rheMac2\|chr11 (111284155-111284377)

	157-797, gnl\|bosTau2\|chr17 (30316567-30317208)
	157-797, gnl\|Hg17\|chr12 (109271952-109271245)