Non-Coding RNA Search

Ss1.1-Pig1-95A08.5

Sequence:


               
               GGGAAGGCGGAAGAGGAGGACAAAGCCACCGCTGCGGAGTGGTGAGGGGGTGCAGCAGCT
GCGGGAGGCCCTGAAGATCCTGGCAGAGAGAGTCCTCATCCTGGAGCACATGATTGGCAT
TCATGATCCCCTGGCCTCCCCCGATGGGGGCTCCGGCCAGGACGCCGCCCTGAGAGCCAA
CCTCAAGATGAAGCGTGGTGGCCCCCCGCCTGATGGCTCCCTGGCTGCCCTGCTTGGCCC
TGATCCCGGGAAGAGGAGTGCTGGCCGGGCCAGCGACGGGAAGTAAGAGGCCAGCCCTCC
AGGACAAGCCCTGACTCCGCAGGGCTCGGGCCCCGAGGCTGGGCTGCCGCCCCCACCTGA
AGACACCCCGAGTGGGACTGGTCTCAAGGCCCGGGTGATGATTAGGGACACTGGCTCCTG
GGGCCTGGGGGCCTTGGGGACAGATGGCAACTCCAAGGGCAGGGTCCAGAGGGGCCCAGA
ACCTTTGGCAGAGCCCTGCCCTCCCTGCCCTCCCTGCCCTCCCTACCCCCACTCCCTGCT
GGAGACAGGGTCTGGTGGGCTTGGCATCGGCTGAGAACAGCTCTAATACCCATCATTGCC
AAGTCCCTGCGTCGTCTGGGCCTGTCCGAGGAGCTTCCCCACGTTGTCTCATTTAACCCT
TAGGAGGTAGGTTTGGTACCCCCACTTTCCTGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAGGCGGAAGAGGAGGACAAAGCCACCGCTGCGGAGTGGTGAGGGGGTGCAGCAGCT
GCGGGAGGCCCTGAAGATCCTGGCAGAGAGAGTCCTCATCCTGGAGCACATGATTGGCAT
TCATGATCCCCTGGCCTCCCCCGATGGGGGCTCCGGCCAGGACGCCGCCCTGAGAGCCAA
CCTCAAGATGAAGCGTGGTGGCCCCCCGCCTGATGGCTCCCTGGCTGCCCTGCTTGGCCC
TGATCCCGGGAAGAGGAGTGCTGGCCGGGCCAGCGACGGGAAGTAAGAGGCCAGCCCTCC
AGGACAAGCCCTGACTCCGCAGGGCTCGGGCCCCGAGGCTGGGCTGCCGCCCCCACCTGA
AGACACCCCGAGTGGGACTGGTCTCAAGGCCCGGGTGATGATTAGGGACACTGGCTCCTG
GGGCCTGGGGGCCTTGGGGACAGATGGCAACTCCAAGGGCAGGGTCCAGAGGGGCCCAGA
ACCTTTGGCAGAGCCCTGCCCTCCCTGCCCTCCCTGCCCTCCCTACCCCCACTCCCTGCT
GGAGACAGGGTCTGGTGGGCTTGGCATCGGCTGAGAACAGCTCTAATACCCATCATTGCC
AAGTCCCTGCGTCGTCTGGGCCTGTCCGAGGAGCTTCCCCACGTTGTCTCATTTAACCCT
TAGGAGGTAGGTTTGGTACCCCCACTTTCCTGGGGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47200326|emb|CAF87899.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|47200326|emb|CAF87899.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-238, - strand, RNAz p=0.635082
               

               
               396-578, + strand, RNAz p=0.993611

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-238, - strand, RNAz p=0.635082
               

               
               396-578, + strand, RNAz p=0.993611

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               120-696, gnl|bosTau2|chr25 (30746997-30747562)
               

               
               120-696, gnl|Hg17|chr7 (100794080-100794644)
               

               
               120-696, gnl|Mm7|chr5 (135714122-135713553)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-696, gnl|bosTau2|chr25 (30746997-30747562)
               

               
               120-696, gnl|Hg17|chr7 (100794080-100794644)
               

               
               120-696, gnl|Mm7|chr5 (135714122-135713553)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               eep (0.122564)

	120-238, - strand, RNAz p=0.635082
	396-578, + strand, RNAz p=0.993611

	120-696, gnl\|bosTau2\|chr25 (30746997-30747562)
	120-696, gnl\|Hg17\|chr7 (100794080-100794644)
	120-696, gnl\|Mm7\|chr5 (135714122-135713553)