Ss1.1-Pig1-95C08.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAGGGCTGCGGGAACCCCAAGGTGAACCCCCAGGGCCCGGGGCCTGAGGAGAAGCGGC GCCGGGGCAAGCTGGCACTGCAGGAGAAGCCACCCTCGGGCACGCTGCAGAAGCTGGTCC CCGAAGCCAAGGCCCAGCTCCGAGATGCCCAGGACTTCTGGATCAGCCTCCCAGGGATGC TGTGCAGTGAGAAGTTGGCCATGAGCTCAGCCAGTGACGACCGCTGTTGGAACGGGGTGG CCAAGGGCCGGTACCTCCCCGATGTGATGGGCGATGGCCTGGCCAACCAGATCAACAACC CCGAGGTGGAGGTGGACGTCACCAAGCCAGACATGACCGTCCGCCAGCAGATCATGCAGC TCAAGATCATGACCAACCGCCTTCGCAGCGCCTACAATGGCAACGACGTGGACTTCCAGG ATGCCAGTGATGACGGCAGCGGCTCAGGCAGCGGCGATGGCTGCGCAGACGACGCCTGCG GCCGGAGGGTCAGCAAGAAAAGCTCCAGCTCCCGGACGACCCTGACCCACGCCCTCCCCG GCCTGTCGGAACAGGAGGGCCAGAAGACCTCGGCCGCGCGCTGCCCCCAGCCCTGCCTGT GCCTCTTGCTCCTCCCTGTCCTCGCCCTGGTCCTCGCAGCATCCAGGCCCCGGTGGCGGT AACTGCCCCTGAGGCCGAGGCCAAGGACTGACTTTGCCAAAACTCAGAACAGACGATATT TAACTTCCTCGCCCTAGTGGCTCCGGGGCGGCACAGGAAGGGACAGCCAGGGACCGCGGC TCTGTGACTGTGCTTGGGGCAGGGTGAGGTGGCACCGGTCCCCCAGGCCTGGCTTTGCCT GCCACCCTGGGTTTTAATTTTGTATGAGGCCCTCAGGTCAGCCAGGAACAGTGTCCCCAA AAGCCATGCATTTCAGGGACCCCGGGGTCGCTGGTGGCCATCTCCCCCCAGCTTCCCTGC ACCATTGCAGCAGCACCCAGGCTGGTGAGGAGGCCGCGCGGAGCAGTGTCCTGCTGGAGC TGAGCCCACGCCTTCCTCACCGCCCCCGGGGCCCTTGGGGCTCCAGGTGTCTGAAAGCCA GACCCTCCCCTCAGGTCCTGAGAAGGTCCTATGCATGAGCCCTTGACCCCCACCCCCAGA GCTGCCTCTGGGCTCTGCTCTCAGCCCCGTCTGGGTGGGGCTGGGCCACCGCCCACAGGA GGACTCCTGCCTGGAGTCCCCACCCAGACCCAGACCTAGGTCCCAGCTCAGGGCAAAGGC CAGGGCTGCAGGGGACCCTGGTGAACCATTAGCTCAGGGCCAGCAAGACCCGGCACTGCA GGCCAGTGGGACCCCAGGGTCCCTTCCCGGACCCCAGCAGCTGCTGGTTTGACAGTTCAG GGCTTTTCCAGCCCCCGTGTTGACAAGCACTTCCTATTCTTCTGAGAGCTGCATCCTCAG CCCCTCCCAAAAAGCTTTGGAAGGCCCCCGGACAACCTCCCCGGCCCCAGGATCACTCAG GCTGCCCAGGCCTCCTCCCCAGGCCCAGGGCCCTCCTTCTGGGTGGGCCCTCCCAGCTGC AGGCCCTGGGGAGAGGGAGCGGTCCCGAGGGCAGGGGGATTCCACACCGCCATGACCCTG ACCGAGACAGCGGTCCCGCCGGGCCTCAGGCCCCAAGAAGCCTGCTCGGCCCTGCTTTGC TTTTCCTCACGGGCTGGGAGTCCCCTGGCCACGGGTTATGGCCTTTTCCACAGGTTGGGT CCAGGGCGCCCCGCCTGCACACCACGAGGCAGCCCAGTCCCAGAGGCACCCCCACCCCAT AATAAGCCTGTTATGTGGGGCAGGGGAGCTGGGCCCGGAGCCTCCTTCCCTGTGGGTGAG GGCCAGCTGGACTCTCGGGGGCCCTGGGGCAGTGACCACCCATGGGCCAGGACGGCCCCA AAGCAGCCTGCACTCCAGCCCCACCCTACGTGCATCTCTGGAAGGGGCAGCCCTGCCGCA GTCACTGGCCAGGCGGCAGCCAGGCCCGCTGTGTGCTCATGCAGCGTCGTGTCGGCAGGT GACGTGTGTTCTTCGGGTCCTCGTATGAATAAAAGGCTGGAGACCGTGAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAGGGCTGCGGGAACCCCAAGGTGAACCCCCAGGGCCCGGGGCCTGAGGAGAAGCGGC GCCGGGGCAAGCTGGCACTGCAGGAGAAGCCACCCTCGGGCACGCTGCAGAAGCTGGTCC CCGAAGCCAAGGCCCAGCTCCGAGATGCCCAGGACTTCTGGATCAGCCTCCCAGGGATGC TGTGCAGTGAGAAGTTGGCCATGAGCTCAGCCAGTGACGACCGCTGTTGGAACGGGGTGG CCAAGGGCCGGTACCTCCCCGATGTGATGGGCGATGGCCTGGCCAACCAGATCAACAACC CCGAGGTGGAGGTGGACGTCACCAAGCCAGACATGACCGTCCGCCAGCAGATCATGCAGC TCAAGATCATGACCAACCGCCTTCGCAGCGCCTACAATGGCAACGACGTGGACTTCCAGG ATGCCAGTGATGACGGCAGCGGCTCAGGCAGCGGCGATGGCTGCGCAGACGACGCCTGCG GCCGGAGGGTCAGCAAGAAAAGCTCCAGCTCCCGGACGACCCTGACCCACGCCCTCCCCG GCCTGTCGGAACAGGAGGGCCAGAAGACCTCGGCCGCGCGCTGCCCCCAGCCCTGCCTGT GCCTCTTGCTCCTCCCTGTCCTCGCCCTGGTCCTCGCAGCATCCAGGCCCCGGTGGCGGT AACTGCCCCTGAGGCCGAGGCCAAGGACTGACTTTGCCAAAACTCAGAACAGACGATATT TAACTTCCTCGCCCTAGTGGCTCCGGGGCGGCACAGGAAGGGACAGCCAGGGACCGCGGC TCTGTGACTGTGCTTGGGGCAGGGTGAGGTGGCACCGGTCCCCCAGGCCTGGCTTTGCCT GCCACCCTGGGTTTTAATTTTGTATGAGGCCCTCAGGTCAGCCAGGAACAGTGTCCCCAA AAGCCATGCATTTCAGGGACCCCGGGGTCGCTGGTGGCCATCTCCCCCCAGCTTCCCTGC ACCATTGCAGCAGCACCCAGGCTGGTGAGGAGGCCGCGCGGAGCAGTGTCCTGCTGGAGC TGAGCCCACGCCTTCCTCACCGCCCCCGGGGCCCTTGGGGCTCCAGGTGTCTGAAAGCCA GACCCTCCCCTCAGGTCCTGAGAAGGTCCTATGCATGAGCCCTTGACCCCCACCCCCAGA GCTGCCTCTGGGCTCTGCTCTCAGCCCCGTCTGGGTGGGGCTGGGCCACCGCCCACAGGA GGACTCCTGCCTGGAGTCCCCACCCAGACCCAGACCTAGGTCCCAGCTCAGGGCAAAGGC CAGGGCTGCAGGGGACCCTGGTGAACCATTAGCTCAGGGCCAGCAAGACCCGGCACTGCA GGCCAGTGGGACCCCAGGGTCCCTTCCCGGACCCCAGCAGCTGCTGGTTTGACAGTTCAG GGCTTTTCCAGCCCCCGTGTTGACAAGCACTTCCTATTCTTCTGAGAGCTGCATCCTCAG CCCCTCCCAAAAAGCTTTGGAAGGCCCCCGGACAACCTCCCCGGCCCCAGGATCACTCAG GCTGCCCAGGCCTCCTCCCCAGGCCCAGGGCCCTCCTTCTGGGTGGGCCCTCCCAGCTGC AGGCCCTGGGGAGAGGGAGCGGTCCCGAGGGCAGGGGGATTCCACACCGCCATGACCCTG ACCGAGACAGCGGTCCCGCCGGGCCTCAGGCCCCAAGAAGCCTGCTCGGCCCTGCTTTGC TTTTCCTCACGGGCTGGGAGTCCCCTGGCCACGGGTTATGGCCTTTTCCACAGGTTGGGT CCAGGGCGCCCCGCCTGCACACCACGAGGCAGCCCAGTCCCAGAGGCACCCCCACCCCAT AATAAGCCTGTTATGTGGGGCAGGGGAGCTGGGCCCGGAGCCTCCTTCCCTGTGGGTGAG GGCCAGCTGGACTCTCGGGGGCCCTGGGGCAGTGACCACCCATGGGCCAGGACGGCCCCA AAGCAGCCTGCACTCCAGCCCCACCCTACGTGCATCTCTGGAAGGGGCAGCCCTGCCGCA GTCACTGGCCAGGCGGCAGCCAGGCCCGCTGTGTGCTCATGCAGCGTCGTGTCGGCAGGT GACGTGTGTTCTTCGGGTCCTCGTATGAATAAAAGGCTGGAGACCGTGAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 508-627, - strand, RNAz p=0.565233 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 508-627, - strand, RNAz p=0.565233 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-118, gnl|bosTau2|chr3 (83301671-83301554) | |
| 1-118, gnl|Hg17|chr2 (241124267-241124384) | |
| 1-118, gnl|Mm7|chr1 (92765061-92765178) | |
| 247-428, gnl|bosTau2|chr19 (31653279-31653098) | |
| 247-428, gnl|canFam2|chr22 (48177476-48177678) | |
| 247-428, gnl|danRer3|chrNA (179847610-179847812) | |
| 247-428, gnl|dasNov1|scaffold_21627 (3976-3774) | |
| 247-428, gnl|echTel1|scaffold_302176 (41963-42164) | |
| 247-428, gnl|fr1|chrUn (95696358-95696152) | |
| 247-428, gnl|galGal2|chr1 (139139241-139139040) | |
| 247-428, gnl|hg17|chr13 (93848706-93848908) | |
| 247-428, gnl|Hg17|chr13 (93848717-93848898) | |
| 247-428, gnl|loxAfr1|scaffold_517 (179629-179802) | |
| 247-428, gnl|mm7|chr14 (112366654-112366856) | |
| 247-428, gnl|Mm7|chr14 (112366665-112366846) | |
| 247-428, gnl|monDom2|scaffold_11 (59058030-59057826) | |
| 247-428, gnl|oryCun1|scaffold_209347 (30835-30632) | |
| 247-428, gnl|panTro1|chr14 (76877977-76878179) | |
| 247-428, gnl|rheMac2|chr17 (74802087-74802289) | |
| 247-428, gnl|rn3|chr15 (102752965-102753167) | |
| 247-428, gnl|tetNig1|chr2 (10623892-10624091) | |
| 247-428, gnl|xenTro1|scaffold_486 (589066-589263) | |
| 429-1098, gnl|bosTau2|chr3 (83300491-83299852) | |
| 429-1098, gnl|Hg17|chr2 (241125467-241126143) | |
| 429-1098, gnl|Mm7|chr1 (92766143-92766822) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-118, gnl|bosTau2|chr3 (83301671-83301554) | |
| 1-118, gnl|Hg17|chr2 (241124267-241124384) | |
| 1-118, gnl|Mm7|chr1 (92765061-92765178) | |
| 247-428, gnl|bosTau2|chr19 (31653279-31653098) | |
| 247-428, gnl|canFam2|chr22 (48177476-48177678) | |
| 247-428, gnl|danRer3|chrNA (179847610-179847812) | |
| 247-428, gnl|dasNov1|scaffold_21627 (3976-3774) | |
| 247-428, gnl|echTel1|scaffold_302176 (41963-42164) | |
| 247-428, gnl|fr1|chrUn (95696358-95696152) | |
| 247-428, gnl|galGal2|chr1 (139139241-139139040) | |
| 247-428, gnl|hg17|chr13 (93848706-93848908) | |
| 247-428, gnl|Hg17|chr13 (93848717-93848898) | |
| 247-428, gnl|loxAfr1|scaffold_517 (179629-179802) | |
| 247-428, gnl|mm7|chr14 (112366654-112366856) | |
| 247-428, gnl|Mm7|chr14 (112366665-112366846) | |
| 247-428, gnl|monDom2|scaffold_11 (59058030-59057826) | |
| 247-428, gnl|oryCun1|scaffold_209347 (30835-30632) | |
| 247-428, gnl|panTro1|chr14 (76877977-76878179) | |
| 247-428, gnl|rheMac2|chr17 (74802087-74802289) | |
| 247-428, gnl|rn3|chr15 (102752965-102753167) | |
| 247-428, gnl|tetNig1|chr2 (10623892-10624091) | |
| 247-428, gnl|xenTro1|scaffold_486 (589066-589263) | |
| 429-1098, gnl|bosTau2|chr3 (83300491-83299852) | |
| 429-1098, gnl|Hg17|chr2 (241125467-241126143) | |
| 429-1098, gnl|Mm7|chr1 (92766143-92766822) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| amn (0.417711) | |
| cov (0.396458) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| cov (0.396458) | |
| elu (0.385356) | |
| fbs (0.350693) | |
| fcc (0.197785) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |