Non-Coding RNA Search

Ss1.1-Pig1-95G13.5

Sequence:


               
               GCAGCCGACCCTGGCCATTCCCCTGCAGGATCTGAGGAGCGTAGAGCTGGGCCTGGCAGC
ACAGAGCCTGCGACTGGAGTGGGTGGCAGGGGTGGGCAGCTGTGTCCTGCTGCCCCGAGA
TGCCAAGCGCTGCAGGGCCTTCCTGGAGGAGCTCACTGGTGAGAGAGGGAAGGGGGAGGA
GCGGGGCGGGCCAGGGGCTGAGCCCCGGTGCCCCGTTCCTGGTGCCTGTGGTGGAGATAG
CTGGGTGACAGGCCTCATCCCTCTCCACAGTTGGGCGGTGGGAGGATGGGAGGGTGTTAA
GAGGTGGGGCTGGAAGAAATAGAGTCTTCGAGGGCTCCCTGGCCCTGGCTGGCTCTGTCC
AGATGTCTTGCAGTCCCTGCCCCCCACCCGGAGGAGCAGCATCAGCGCCACGGAGGAGGA
GGTGACCCCGAAGCACCGGCTCTGGCCATTGCTGGAGAGAGACTCCTCCTCAGAGCCGCC
CCAGTTCTTCTACCTTCGGGTGTTCCTGGTCGAAGGCCCTGCTACCTGCCCTGTGTCCCT
GTTGCTGACTCGGTCCACCCTGTACCTGTTAGAGGAGGACTGCATAGGGTCCCAGGCAGA
GCCCCCGCTTCCAGCAGCATCGGGTGAAGCCTCTGAGAAGTCCCCACCCTCCGGGCCAGG
CCCTTCAGTGCGCGTCAGGGAGCAGCAGCCACTCAGCAGCCTGAGCTCCGTGCTGCTCTA
CCGCGTGGACCCAAAGCACTTGCGGCTGGTCTTCTACGACGAGGTGTCCCGGCTGGAGAG
CTTCTGGGCGCTCCGTGTCGTGTGTCCAGAGCAGCTGACGGCCCTGCTGGCCTGGATCCG
GGAGCCCTGGGAGGAGTTGTTTTCCATTGGACTCCGAACTGTGACCCAAGAGGCGCTAGA
CCTTGACCAGTGAGGCTGCCATGCTGGCCCCATCCCCCACTCTGGGGCCACGGCGACGGA
CGTTCTCTCTCCAGACTCTGGCTGCGGCCTCCTCTGGCTTTGGGGCGTTGGTCGGCAAGG
CCCCAGATGACCGACGACTCAAGGCTAGGGTGAGAGGACTGGTCTGGCCTCCAGACGACC
TGGCCCAAGGGTCAGGCTGAGTGATCCGTAGGAATGTTTCTCCTGCACTTTTTCTCAGGT
ATCAATAAAGTGGTTTCCAGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCCGACCCTGGCCATTCCCCTGCAGGATCTGAGGAGCGTAGAGCTGGGCCTGGCAGC
ACAGAGCCTGCGACTGGAGTGGGTGGCAGGGGTGGGCAGCTGTGTCCTGCTGCCCCGAGA
TGCCAAGCGCTGCAGGGCCTTCCTGGAGGAGCTCACTGGTGAGAGAGGGAAGGGGGAGGA
GCGGGGCGGGCCAGGGGCTGAGCCCCGGTGCCCCGTTCCTGGTGCCTGTGGTGGAGATAG
CTGGGTGACAGGCCTCATCCCTCTCCACAGTTGGGCGGTGGGAGGATGGGAGGGTGTTAA
GAGGTGGGGCTGGAAGAAATAGAGTCTTCGAGGGCTCCCTGGCCCTGGCTGGCTCTGTCC
AGATGTCTTGCAGTCCCTGCCCCCCACCCGGAGGAGCAGCATCAGCGCCACGGAGGAGGA
GGTGACCCCGAAGCACCGGCTCTGGCCATTGCTGGAGAGAGACTCCTCCTCAGAGCCGCC
CCAGTTCTTCTACCTTCGGGTGTTCCTGGTCGAAGGCCCTGCTACCTGCCCTGTGTCCCT
GTTGCTGACTCGGTCCACCCTGTACCTGTTAGAGGAGGACTGCATAGGGTCCCAGGCAGA
GCCCCCGCTTCCAGCAGCATCGGGTGAAGCCTCTGAGAAGTCCCCACCCTCCGGGCCAGG
CCCTTCAGTGCGCGTCAGGGAGCAGCAGCCACTCAGCAGCCTGAGCTCCGTGCTGCTCTA
CCGCGTGGACCCAAAGCACTTGCGGCTGGTCTTCTACGACGAGGTGTCCCGGCTGGAGAG
CTTCTGGGCGCTCCGTGTCGTGTGTCCAGAGCAGCTGACGGCCCTGCTGGCCTGGATCCG
GGAGCCCTGGGAGGAGTTGTTTTCCATTGGACTCCGAACTGTGACCCAAGAGGCGCTAGA
CCTTGACCAGTGAGGCTGCCATGCTGGCCCCATCCCCCACTCTGGGGCCACGGCGACGGA
CGTTCTCTCTCCAGACTCTGGCTGCGGCCTCCTCTGGCTTTGGGGCGTTGGTCGGCAAGG
CCCCAGATGACCGACGACTCAAGGCTAGGGTGAGAGGACTGGTCTGGCCTCCAGACGACC
TGGCCCAAGGGTCAGGCTGAGTGATCCGTAGGAATGTTTCTCCTGCACTTTTTCTCAGGT
ATCAATAAAGTGGTTTCCAGTCCC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-187, - strand, RNAz p=0.964206
               

               
               553-752, - strand, RNAz p=0.653634

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-187, - strand, RNAz p=0.964206
               

               
               553-752, - strand, RNAz p=0.653634

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               46-143, + strand, RNAmicro p=0.987694

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               46-143, + strand, RNAmicro p=0.987694

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-445, gnl|bosTau2|chr2 (64296860-64296413)
               

               
               1-445, gnl|Hg17|chr2 (220304000-220304470)
               

               
               1-445, gnl|Mm7|chr1 (75759968-75760448)
               


               
               514-767, gnl|bosTau2|chr2 (64295645-64295392)
               

               
               514-767, gnl|Hg17|chr2 (220305319-220305572)
               

               
               514-767, gnl|Mm7|chr1 (75761370-75761623)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-445, gnl|bosTau2|chr2 (64296860-64296413)
               

               
               1-445, gnl|Hg17|chr2 (220304000-220304470)
               

               
               1-445, gnl|Mm7|chr1 (75759968-75760448)
               


               
               514-767, gnl|bosTau2|chr2 (64295645-64295392)
               

               
               514-767, gnl|Hg17|chr2 (220305319-220305572)
               

               
               514-767, gnl|Mm7|chr1 (75761370-75761623)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	40-187, - strand, RNAz p=0.964206
	553-752, - strand, RNAz p=0.653634

	1-445, gnl\|bosTau2\|chr2 (64296860-64296413)
	1-445, gnl\|Hg17\|chr2 (220304000-220304470)
	1-445, gnl\|Mm7\|chr1 (75759968-75760448)

	514-767, gnl\|bosTau2\|chr2 (64295645-64295392)
	514-767, gnl\|Hg17\|chr2 (220305319-220305572)
	514-767, gnl\|Mm7\|chr1 (75761370-75761623)