Non-Coding RNA Search

Ss1.1-Pig1-95G22.5

Sequence:


               
               AATTCTTTGACTTGCATACAGCTTGCACACTGTAGCTTAGAAATCCCCAGTTTGTAGTCA
CCCCAGTTTATTTCCAATTGTGCCATCTTTTTAGCTAAGACATAAGACCAACATGAAGAG
TTTGGTAGAATTATCATTGTCAAGAGACGTATCAAGCTCCTGACATTTTTTTCTAGGAAT
GTTTACAGGATGAGATGTGCTATAAATGGTATTTATGTGGCTACATCAGTGGTGGTGTAG
TTTCCTAATTTTTAACTCAATATCTTGATTTGAGCATGGGTTTTTTGGAAGGTGTTGAGA
AATCCATGTAAATCCAAATTAGAGGCTATATTCTTCCATCTTCATAGTCTTACCTTTGAA
GGAATTGTACCTGACCACATTGCTATAAAACATTATGGCTATTTATGTAACTTAGGGAGG
ACTGGTCTGTAATTTCTGAATGACATATAGAAAAACATTTATGTTTACAATTTAACTTTT
TAAAACTTACACATCAGGATTACATACAGAGGAATTCCACTTCAAGGTTCTTAAAATTGC
CAGCATTAAGATTTAAAAAATGACATTTCAAAAGAGCACAACATGCACAAAACATTTTTC
AAAATTAAAGTATTTTCCTGGGCATTAAAAAACCTTTACTATTGGCTAATTATTGTTACT
GATTTAAAAAAAACACATATTTTCTGGACTCAAATGTTATTACAAATATCTTAATTTTCA
ACAATTGTTTTGCACTTTCAAATAGATTGTAAATAGTTCATTCAAGCAATGGTATAGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCTTTGACTTGCATACAGCTTGCACACTGTAGCTTAGAAATCCCCAGTTTGTAGTCA
CCCCAGTTTATTTCCAATTGTGCCATCTTTTTAGCTAAGACATAAGACCAACATGAAGAG
TTTGGTAGAATTATCATTGTCAAGAGACGTATCAAGCTCCTGACATTTTTTTCTAGGAAT
GTTTACAGGATGAGATGTGCTATAAATGGTATTTATGTGGCTACATCAGTGGTGGTGTAG
TTTCCTAATTTTTAACTCAATATCTTGATTTGAGCATGGGTTTTTTGGAAGGTGTTGAGA
AATCCATGTAAATCCAAATTAGAGGCTATATTCTTCCATCTTCATAGTCTTACCTTTGAA
GGAATTGTACCTGACCACATTGCTATAAAACATTATGGCTATTTATGTAACTTAGGGAGG
ACTGGTCTGTAATTTCTGAATGACATATAGAAAAACATTTATGTTTACAATTTAACTTTT
TAAAACTTACACATCAGGATTACATACAGAGGAATTCCACTTCAAGGTTCTTAAAATTGC
CAGCATTAAGATTTAAAAAATGACATTTCAAAAGAGCACAACATGCACAAAACATTTTTC
AAAATTAAAGTATTTTCCTGGGCATTAAAAAACCTTTACTATTGGCTAATTATTGTTACT
GATTTAAAAAAAACACATATTTTCTGGACTCAAATGTTATTACAAATATCTTAATTTTCA
ACAATTGTTTTGCACTTTCAAATAGATTGTAAATAGTTCATTCAAGCAATGGTATAGAGT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr2 (15587709-15586919)
               

               
               1-780, gnl|Hg17|chr2 (173742175-173742936)
               

               
               1-780, gnl|Mm7|chr2 (72100259-72100994)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr2 (15587709-15586919)
               

               
               1-780, gnl|Hg17|chr2 (173742175-173742936)
               

               
               1-780, gnl|Mm7|chr2 (72100259-72100994)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fco (0.628832)
               

               
               fat (0.442282)
               

               
               tbr (0.308356)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.628832)
               

               
               fat (0.442282)
               

               
               tbr (0.308356)
               

               
               tes (0.207814)
               

               
               fbs (0.175346)
               

               
               ret (0.128733)

	1-780, gnl\|bosTau2\|chr2 (15587709-15586919)
	1-780, gnl\|Hg17\|chr2 (173742175-173742936)
	1-780, gnl\|Mm7\|chr2 (72100259-72100994)

	fco (0.628832)
	fat (0.442282)
	tbr (0.308356)
	tes (0.207814)
	fbs (0.175346)
	ret (0.128733)