Ss1.1-Pig1-95L04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGATGGTCCTGGTGGACAGGACCCTCACAGATGTCTCCTTTCAGAGCAACGCGCTCT TTGCCGAGGCAGGGCCAGACTTCGAACTTCGACTGGAGCTGTATGGGGCCTGCGTGGAAG AGGAGGGAGCCCTGGCTGGAGCGCCCAAGAGGCTGGCCACCAAACTCAGCAGCTCCCTGG GTCGCTCCTCAGGGAGGCGTGTTCGGGCATCGCTGGAGATGGCAGGGGGGGTCAAGGGAG CAGTCCCATCCTGCTCCCCACCCCCGCTGTGGGCGGTCCCCGTTACCACCTCCTGGCTCA CACCACGCTCACCCTGGCCGAGGTGCAGGATGGGTTCCGCACACATGACCTCACCCTCGC CAGTCCGGAGGAGAACCCTGCCTGGCTGCCCCTTTATGGTAGCGTGTGTTGCCGCCTGGT GGCTCAGCCTCTCTGCATGACTCAGCCTACAGCGAGTGGTCCCCTCAGGGTGCAGCAAGC TGGGGAGCTGCAGGACTGGGTGCGAGTGCATGGAGTCCTGAAAGGCACAAACCTCTTCTG TTACCGGCAACCTGAAGACACAGACACTGGGGAAGAGCCGCTGTTTACTATTGGGATCAA CAAGGAGACGCGAGTCCGGGCAGGGGAGCTGGACCAGGCAGCGGGCCGGCCTTTCACCCT GAGCATCAGTAACCAGTATGGGGAGGACGAGGTGACACACACCCTTCAGGCAGAGAGTCG GGGAGCCCTGCAGAGCTGGATGGAGGCTTTGTGGCAGCTTTTCTTTGACATGAGCCAGTG GAAGCAGTGCTGTGATGAGCTAATGAAAATTGAAACCCCTGCTCCCCGGAAACCACCCCA AGTACTGGCCAAGCAGGGGTCCCTGTACCATGAAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGATGGTCCTGGTGGACAGGACCCTCACAGATGTCTCCTTTCAGAGCAACGCGCTCT TTGCCGAGGCAGGGCCAGACTTCGAACTTCGACTGGAGCTGTATGGGGCCTGCGTGGAAG AGGAGGGAGCCCTGGCTGGAGCGCCCAAGAGGCTGGCCACCAAACTCAGCAGCTCCCTGG GTCGCTCCTCAGGGAGGCGTGTTCGGGCATCGCTGGAGATGGCAGGGGGGGTCAAGGGAG CAGTCCCATCCTGCTCCCCACCCCCGCTGTGGGCGGTCCCCGTTACCACCTCCTGGCTCA CACCACGCTCACCCTGGCCGAGGTGCAGGATGGGTTCCGCACACATGACCTCACCCTCGC CAGTCCGGAGGAGAACCCTGCCTGGCTGCCCCTTTATGGTAGCGTGTGTTGCCGCCTGGT GGCTCAGCCTCTCTGCATGACTCAGCCTACAGCGAGTGGTCCCCTCAGGGTGCAGCAAGC TGGGGAGCTGCAGGACTGGGTGCGAGTGCATGGAGTCCTGAAAGGCACAAACCTCTTCTG TTACCGGCAACCTGAAGACACAGACACTGGGGAAGAGCCGCTGTTTACTATTGGGATCAA CAAGGAGACGCGAGTCCGGGCAGGGGAGCTGGACCAGGCAGCGGGCCGGCCTTTCACCCT GAGCATCAGTAACCAGTATGGGGAGGACGAGGTGACACACACCCTTCAGGCAGAGAGTCG GGGAGCCCTGCAGAGCTGGATGGAGGCTTTGTGGCAGCTTTTCTTTGACATGAGCCAGTG GAAGCAGTGCTGTGATGAGCTAATGAAAATTGAAACCCCTGCTCCCCGGAAACCACCCCA AGTACTGGCCAAGCAGGGGTCCCTGTACCATGAAAT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 157-273, + strand, RNAz p=0.891226 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 157-273, + strand, RNAz p=0.891226 |
| Predicted microRNA(s): 2 entry(ies) | More info |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
| 85-212, - strand, RNAmicro p=0.996096 | |
| 80-194, + strand, RNAmicro p=0.975706 |
| Predicted microRNA(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
| 85-212, - strand, RNAmicro p=0.996096 | |
| 80-194, + strand, RNAmicro p=0.975706 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 62-273, gnl|bosTau2|chr11 (7894057-7894266) | |
| 62-273, gnl|canFam2|chr17 (51765726-51765587) | |
| 62-273, gnl|dasNov1|scaffold_24243 (10046-10185) | |
| 62-273, gnl|echTel1|scaffold_318774 (54368-54229) | |
| 62-273, gnl|fr1|chrUn (174912524-174912376) | |
| 62-273, gnl|hg17|chr2 (74568606-74568745) | |
| 62-273, gnl|Hg17|chr2 (74568819-74568610) | |
| 62-273, gnl|loxAfr1|scaffold_37592 (7727-7866) | |
| 62-273, gnl|mm7|chr6 (83173755-83173616) | |
| 62-273, gnl|Mm7|chr6 (83173540-83173749) | |
| 62-273, gnl|monDom2|scaffold_10 (48223362-48223211) | |
| 62-273, gnl|oryCun1|scaffold_150297 (9319-9459) | |
| 62-273, gnl|panTro1|chr12 (76971603-76971742) | |
| 62-273, gnl|rheMac2|chr13 (74658986-74659125) | |
| 62-273, gnl|rn3|chr4 (117603870-117603731) | |
| 62-273, gnl|tetNig1|chr12 (1142886-1142738) | |
| 471-619, gnl|bosTau2|chr11 (7895546-7895694) | |
| 471-619, gnl|canFam2|chr17 (51767170-51767031) | |
| 471-619, gnl|danRer3|chr5 (47823132-47823273) | |
| 471-619, gnl|fr1|chrUn (174913798-174913676) | |
| 471-619, gnl|hg17|chr2 (74567031-74567170) | |
| 471-619, gnl|Hg17|chr2 (74567183-74567034) | |
| 471-619, gnl|mm7|chr6 (83175555-83175416) | |
| 471-619, gnl|Mm7|chr6 (83175401-83175550) | |
| 471-619, gnl|monDom2|scaffold_10 (48224495-48224359) | |
| 471-619, gnl|oryCun1|scaffold_150297 (8172-8311) | |
| 471-619, gnl|panTro1|chr12 (76970025-76970164) | |
| 471-619, gnl|rheMac2|chr13 (74657446-74657584) | |
| 471-619, gnl|rn3|chr4 (117606245-117606106) | |
| 471-619, gnl|tetNig1|chr12 (1144386-1144271) | |
| 471-619, gnl|xenTro1|scaffold_13419 (379-511) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 62-273, gnl|bosTau2|chr11 (7894057-7894266) | |
| 62-273, gnl|canFam2|chr17 (51765726-51765587) | |
| 62-273, gnl|dasNov1|scaffold_24243 (10046-10185) | |
| 62-273, gnl|echTel1|scaffold_318774 (54368-54229) | |
| 62-273, gnl|fr1|chrUn (174912524-174912376) | |
| 62-273, gnl|hg17|chr2 (74568606-74568745) | |
| 62-273, gnl|Hg17|chr2 (74568819-74568610) | |
| 62-273, gnl|loxAfr1|scaffold_37592 (7727-7866) | |
| 62-273, gnl|mm7|chr6 (83173755-83173616) | |
| 62-273, gnl|Mm7|chr6 (83173540-83173749) | |
| 62-273, gnl|monDom2|scaffold_10 (48223362-48223211) | |
| 62-273, gnl|oryCun1|scaffold_150297 (9319-9459) | |
| 62-273, gnl|panTro1|chr12 (76971603-76971742) | |
| 62-273, gnl|rheMac2|chr13 (74658986-74659125) | |
| 62-273, gnl|rn3|chr4 (117603870-117603731) | |
| 62-273, gnl|tetNig1|chr12 (1142886-1142738) | |
| 471-619, gnl|bosTau2|chr11 (7895546-7895694) | |
| 471-619, gnl|canFam2|chr17 (51767170-51767031) | |
| 471-619, gnl|danRer3|chr5 (47823132-47823273) | |
| 471-619, gnl|fr1|chrUn (174913798-174913676) | |
| 471-619, gnl|hg17|chr2 (74567031-74567170) | |
| 471-619, gnl|Hg17|chr2 (74567183-74567034) | |
| 471-619, gnl|mm7|chr6 (83175555-83175416) | |
| 471-619, gnl|Mm7|chr6 (83175401-83175550) | |
| 471-619, gnl|monDom2|scaffold_10 (48224495-48224359) | |
| 471-619, gnl|oryCun1|scaffold_150297 (8172-8311) | |
| 471-619, gnl|panTro1|chr12 (76970025-76970164) | |
| 471-619, gnl|rheMac2|chr13 (74657446-74657584) | |
| 471-619, gnl|rn3|chr4 (117606245-117606106) | |
| 471-619, gnl|tetNig1|chr12 (1144386-1144271) | |
| 471-619, gnl|xenTro1|scaffold_13419 (379-511) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.239292) | |
| nlu (0.191681) | |
| fhi (0.169578) |