Non-Coding RNA Search

Ss1.1-Pig1-95L11.5

Sequence:


               
               TTCATCTTTCACATGTCCAAAGACCAGCACATGTAAAACCTTACCTGGATTATTCACCTA
TAGTTAAAGAAAAAATGTTCTACATATCTGTTAGGAGAAGGATTTTCAATCTGAAGTTCA
GATTTCACTGCAGCAATAACTGCTACCACAAAAATGTGGTCTGACAAAAGAGATTCACAA
CCTTCTCAAACAGTTCACCTATTCAGCAAGATTTAATACCACCAACTGGATTCCACTGTG
ACAAAGGAATAAGACAAATCCTTACAGTTCTCTGTAATGGGGTCTAACCTTTCCCAGAAT
CGAGCATAAAGGATGATTACAGTAAAAAGAATTATAATGAAGTCTCACTGACTTTCTCAG
TATAAAAGGGTTTGTCAAGAGAATTAACATATCTTTCAGCTGATTTTCAGCTATATACTT
TTATGATACATAGTATTCTATAATCTTTCCTTCCAATTTACATGGGCATAAGCCTTGGGA
AATAATTTGCCTGACTTGTTCACTGGCACTGTAAGAAGTAAGATGTTATTTTAAATACAT
GAAATTGATTTTTAAAATGTGTGGCTTACCCTTAAGAGTGTATCTGTCTATAGTTTCTGT
TTGTTAGTGTGCAAGTTTATGTACACTCAAGTTGATATATGTATTAGGAGACATTTTATA
ATTATAGAACTATAATATTTAAAGCTATAAAGCCATCGTTAGAATAATTTTCTTATAGGA
AACTTGGCATGCCTTAATGTTGTCTTTAAGGACAAGAGAGTCTCTCACAGGTCACGAATG
ATGAATTTGAAATCAACCACAGAATGAGATGCCATAATCGTATAGCTCTTTTTTGATTAT
TCAGTATCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATCTTTCACATGTCCAAAGACCAGCACATGTAAAACCTTACCTGGATTATTCACCTA
TAGTTAAAGAAAAAATGTTCTACATATCTGTTAGGAGAAGGATTTTCAATCTGAAGTTCA
GATTTCACTGCAGCAATAACTGCTACCACAAAAATGTGGTCTGACAAAAGAGATTCACAA
CCTTCTCAAACAGTTCACCTATTCAGCAAGATTTAATACCACCAACTGGATTCCACTGTG
ACAAAGGAATAAGACAAATCCTTACAGTTCTCTGTAATGGGGTCTAACCTTTCCCAGAAT
CGAGCATAAAGGATGATTACAGTAAAAAGAATTATAATGAAGTCTCACTGACTTTCTCAG
TATAAAAGGGTTTGTCAAGAGAATTAACATATCTTTCAGCTGATTTTCAGCTATATACTT
TTATGATACATAGTATTCTATAATCTTTCCTTCCAATTTACATGGGCATAAGCCTTGGGA
AATAATTTGCCTGACTTGTTCACTGGCACTGTAAGAAGTAAGATGTTATTTTAAATACAT
GAAATTGATTTTTAAAATGTGTGGCTTACCCTTAAGAGTGTATCTGTCTATAGTTTCTGT
TTGTTAGTGTGCAAGTTTATGTACACTCAAGTTGATATATGTATTAGGAGACATTTTATA
ATTATAGAACTATAATATTTAAAGCTATAAAGCCATCGTTAGAATAATTTTCTTATAGGA
AACTTGGCATGCCTTAATGTTGTCTTTAAGGACAAGAGAGTCTCTCACAGGTCACGAATG
ATGAATTTGAAATCAACCACAGAATGAGATGCCATAATCGTATAGCTCTTTTTTGATTAT
TCAGTATCCTGC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-838, gnl|bosTau2|chr14 (34564722-34565545)
               

               
               1-838, gnl|canFam2|chr13 (12445452-12446192)
               

               
               1-838, gnl|dasNov1|scaffold_43215 (4154-4878)
               

               
               1-838, gnl|echTel1|scaffold_286707 (44757-45419)
               

               
               1-838, gnl|hg17|chr8 (109860844-109861539)
               

               
               1-838, gnl|Hg17|chr8 (109861761-109860981)
               

               
               1-838, gnl|loxAfr1|scaffold_128477 (3690-4384)
               

               
               1-838, gnl|mm7|chr15 (43906999-43907755)
               

               
               1-838, gnl|Mm7|chr15 (43908110-43907159)
               

               
               1-838, gnl|monDom2|scaffold_3 (52503742-52503001)
               

               
               1-838, gnl|oryCun1|scaffold_199351 (35771-36513)
               

               
               1-838, gnl|panTro1|chr7 (112340774-112341467)
               

               
               1-838, gnl|rheMac2|chr8 (111193149-111193852)
               

               
               1-838, gnl|rn3|chr7 (79627529-79628245)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-838, gnl|bosTau2|chr14 (34564722-34565545)
               

               
               1-838, gnl|canFam2|chr13 (12445452-12446192)
               

               
               1-838, gnl|dasNov1|scaffold_43215 (4154-4878)
               

               
               1-838, gnl|echTel1|scaffold_286707 (44757-45419)
               

               
               1-838, gnl|hg17|chr8 (109860844-109861539)
               

               
               1-838, gnl|Hg17|chr8 (109861761-109860981)
               

               
               1-838, gnl|loxAfr1|scaffold_128477 (3690-4384)
               

               
               1-838, gnl|mm7|chr15 (43906999-43907755)
               

               
               1-838, gnl|Mm7|chr15 (43908110-43907159)
               

               
               1-838, gnl|monDom2|scaffold_3 (52503742-52503001)
               

               
               1-838, gnl|oryCun1|scaffold_199351 (35771-36513)
               

               
               1-838, gnl|panTro1|chr7 (112340774-112341467)
               

               
               1-838, gnl|rheMac2|chr8 (111193149-111193852)
               

               
               1-838, gnl|rn3|chr7 (79627529-79628245)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fco (0.157208)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.157208)
               

               
               liv (0.146284)

	1-838, gnl\|bosTau2\|chr14 (34564722-34565545)
	1-838, gnl\|canFam2\|chr13 (12445452-12446192)
	1-838, gnl\|dasNov1\|scaffold_43215 (4154-4878)
	1-838, gnl\|echTel1\|scaffold_286707 (44757-45419)
	1-838, gnl\|hg17\|chr8 (109860844-109861539)
	1-838, gnl\|Hg17\|chr8 (109861761-109860981)
	1-838, gnl\|loxAfr1\|scaffold_128477 (3690-4384)
	1-838, gnl\|mm7\|chr15 (43906999-43907755)
	1-838, gnl\|Mm7\|chr15 (43908110-43907159)
	1-838, gnl\|monDom2\|scaffold_3 (52503742-52503001)
	1-838, gnl\|oryCun1\|scaffold_199351 (35771-36513)
	1-838, gnl\|panTro1\|chr7 (112340774-112341467)
	1-838, gnl\|rheMac2\|chr8 (111193149-111193852)
	1-838, gnl\|rn3\|chr7 (79627529-79628245)