Non-Coding RNA Search

Ss1.1-Pig1-95N10.5

Sequence:


               
               CTGGAGCAGGAACCCAGCAACCGTTCTTCTGTCAGGCTCAGAAAAAAAGTTGAATCAGAC
GTCCCCCATTTCTGCTTCCAAGACTGCAGAGGGCTTGAGGCAAGCGCCCATCCCAGGCCT
CTTGAGCACTGCGCTGCCAGGGCAGGATTCTGGAAGCAAAGTTATACCGGCGTCCTTAGG
AACCACACAGCCACAGCAGGAAAAAGTAGTTGGATCATCTCCTGGCCAGCCAGCTGTACA
GGTGGATGGTCATTCGGGAGGACAAAAGAGGCCTGCTGCAAAACAACTAACTAAAGGAGC
TTTCATTCTCCAGCAGTTACAGAGGGACCAAGCCCACGCGGTGACACCCGACAAAAGTCA
GTTCCGATCACTGAGCGACGCGGTGCAAAGGCTGCTCTCCTACCACGTGTGCCAGGGCTC
CATGCCCACGGAGGAGGACCTGAGGAAAGTTGACAATGAATTCGAAACAGTTGCCACTCA
GCTCCTAAAAAGGACCCAAGCTATGCTTAACAAGTACAGATGCCTGCTTCTGGAAGACGC
CATGCGGATCAATCCCTCTGCTGAGATGGTGATGATCGACAGAATGTTCAACCAGGAGGA
GAGAGCTGCCCTCTCCCGGGACAAGCGTCTGGCCCTCGTGGACCCCGAGGGTTTTCAGGC
CGATTTCTGTTGTTCCTTCAAACCCAGTAAAGCTGCTCCTGAGATGCAGTTTGGCAGGAG
TGACCAGCCAGGCAGTAAAGCAGCCAGTTCTGTGCATCTGCCGGCCAAGGCCCAGAGCAG
AGACCGAGCCAAACCAGGCATGGCAGAACCAACAAATCATGACCAATTTCATCTAGTGCC
TAATCACGTCGTGGTCTCCGCAGAAGGAAGCATTTCCAAAAAAACCGAATGCCTCGGCAG
AGCCCTGAAATTTGACAAAATGGGCTCAGTTCAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGAGCAGGAACCCAGCAACCGTTCTTCTGTCAGGCTCAGAAAAAAAGTTGAATCAGAC
GTCCCCCATTTCTGCTTCCAAGACTGCAGAGGGCTTGAGGCAAGCGCCCATCCCAGGCCT
CTTGAGCACTGCGCTGCCAGGGCAGGATTCTGGAAGCAAAGTTATACCGGCGTCCTTAGG
AACCACACAGCCACAGCAGGAAAAAGTAGTTGGATCATCTCCTGGCCAGCCAGCTGTACA
GGTGGATGGTCATTCGGGAGGACAAAAGAGGCCTGCTGCAAAACAACTAACTAAAGGAGC
TTTCATTCTCCAGCAGTTACAGAGGGACCAAGCCCACGCGGTGACACCCGACAAAAGTCA
GTTCCGATCACTGAGCGACGCGGTGCAAAGGCTGCTCTCCTACCACGTGTGCCAGGGCTC
CATGCCCACGGAGGAGGACCTGAGGAAAGTTGACAATGAATTCGAAACAGTTGCCACTCA
GCTCCTAAAAAGGACCCAAGCTATGCTTAACAAGTACAGATGCCTGCTTCTGGAAGACGC
CATGCGGATCAATCCCTCTGCTGAGATGGTGATGATCGACAGAATGTTCAACCAGGAGGA
GAGAGCTGCCCTCTCCCGGGACAAGCGTCTGGCCCTCGTGGACCCCGAGGGTTTTCAGGC
CGATTTCTGTTGTTCCTTCAAACCCAGTAAAGCTGCTCCTGAGATGCAGTTTGGCAGGAG
TGACCAGCCAGGCAGTAAAGCAGCCAGTTCTGTGCATCTGCCGGCCAAGGCCCAGAGCAG
AGACCGAGCCAAACCAGGCATGGCAGAACCAACAAATCATGACCAATTTCATCTAGTGCC
TAATCACGTCGTGGTCTCCGCAGAAGGAAGCATTTCCAAAAAAACCGAATGCCTCGGCAG
AGCCCTGAAATTTGACAAAATGGGCTCAGTTCAGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               766-885, - strand, RNAz p=0.854153

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               766-885, - strand, RNAz p=0.854153

Aligned organism(s): 21 entry(ies)

More info

Aligned organism(s): 21 entry(ies)

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               33-150, gnl|bosTau2|chr23 (12939056-12939174)
               

               
               33-150, gnl|canFam2|chr12 (14426663-14426903)
               

               
               33-150, gnl|dasNov1|scaffold_3896 (61049-60809)
               

               
               33-150, gnl|echTel1|scaffold_47926 (3692-3472)
               

               
               33-150, gnl|galGal2|chr3 (19431805-19432060)
               

               
               33-150, gnl|hg17|chr6 (42927747-42927970)
               

               
               33-150, gnl|Hg17|chr6 (42927805-42927921)
               

               
               33-150, gnl|loxAfr1|scaffold_12521 (9180-9425)
               

               
               33-150, gnl|mm7|chr17 (44944088-44943833)
               

               
               33-150, gnl|Mm7|chr17 (44944028-44943910)
               

               
               33-150, gnl|monDom2|scaffold_0 (198828487-198828249)
               

               
               33-150, gnl|oryCun1|scaffold_104791 (6373-6577)
               

               
               33-150, gnl|panTro1|chr5 (43515611-43515834)
               

               
               33-150, gnl|rheMac2|chr4 (42736348-42736569)
               

               
               33-150, gnl|rn3|chr9 (9364082-9364348)
               


               
               304-453, gnl|bosTau2|chr23 (12942364-12942513)
               

               
               304-453, gnl|Hg17|chr6 (42932807-42932956)
               

               
               304-453, gnl|Mm7|chr17 (44938480-44938331)
               


               
               647-936, gnl|bosTau2|chr23 (12948438-12948727)
               

               
               647-936, gnl|Hg17|chr6 (42940374-42940663)
               

               
               647-936, gnl|Mm7|chr17 (44931700-44931414)

Aligned organism(s): 21 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               33-150, gnl|bosTau2|chr23 (12939056-12939174)
               

               
               33-150, gnl|canFam2|chr12 (14426663-14426903)
               

               
               33-150, gnl|dasNov1|scaffold_3896 (61049-60809)
               

               
               33-150, gnl|echTel1|scaffold_47926 (3692-3472)
               

               
               33-150, gnl|galGal2|chr3 (19431805-19432060)
               

               
               33-150, gnl|hg17|chr6 (42927747-42927970)
               

               
               33-150, gnl|Hg17|chr6 (42927805-42927921)
               

               
               33-150, gnl|loxAfr1|scaffold_12521 (9180-9425)
               

               
               33-150, gnl|mm7|chr17 (44944088-44943833)
               

               
               33-150, gnl|Mm7|chr17 (44944028-44943910)
               

               
               33-150, gnl|monDom2|scaffold_0 (198828487-198828249)
               

               
               33-150, gnl|oryCun1|scaffold_104791 (6373-6577)
               

               
               33-150, gnl|panTro1|chr5 (43515611-43515834)
               

               
               33-150, gnl|rheMac2|chr4 (42736348-42736569)
               

               
               33-150, gnl|rn3|chr9 (9364082-9364348)
               


               
               304-453, gnl|bosTau2|chr23 (12942364-12942513)
               

               
               304-453, gnl|Hg17|chr6 (42932807-42932956)
               

               
               304-453, gnl|Mm7|chr17 (44938480-44938331)
               


               
               647-936, gnl|bosTau2|chr23 (12948438-12948727)
               

               
               647-936, gnl|Hg17|chr6 (42940374-42940663)
               

               
               647-936, gnl|Mm7|chr17 (44931700-44931414)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	33-150, gnl\|bosTau2\|chr23 (12939056-12939174)
	33-150, gnl\|canFam2\|chr12 (14426663-14426903)
	33-150, gnl\|dasNov1\|scaffold_3896 (61049-60809)
	33-150, gnl\|echTel1\|scaffold_47926 (3692-3472)
	33-150, gnl\|galGal2\|chr3 (19431805-19432060)
	33-150, gnl\|hg17\|chr6 (42927747-42927970)
	33-150, gnl\|Hg17\|chr6 (42927805-42927921)
	33-150, gnl\|loxAfr1\|scaffold_12521 (9180-9425)
	33-150, gnl\|mm7\|chr17 (44944088-44943833)
	33-150, gnl\|Mm7\|chr17 (44944028-44943910)
	33-150, gnl\|monDom2\|scaffold_0 (198828487-198828249)
	33-150, gnl\|oryCun1\|scaffold_104791 (6373-6577)
	33-150, gnl\|panTro1\|chr5 (43515611-43515834)
	33-150, gnl\|rheMac2\|chr4 (42736348-42736569)
	33-150, gnl\|rn3\|chr9 (9364082-9364348)

	304-453, gnl\|bosTau2\|chr23 (12942364-12942513)
	304-453, gnl\|Hg17\|chr6 (42932807-42932956)
	304-453, gnl\|Mm7\|chr17 (44938480-44938331)

	647-936, gnl\|bosTau2\|chr23 (12948438-12948727)
	647-936, gnl\|Hg17\|chr6 (42940374-42940663)
	647-936, gnl\|Mm7\|chr17 (44931700-44931414)