Ss1.1-Pig1-96E10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCACGAGGGAGAGCCGAGGGGAGAGAGACGCGAGAGGAACCGCGCGAGAGCCCGCACG CTAAGGGCTGGGGGCTGCGGGGAGAGAAGTGAAGCGGTGGGCCCGCGAACGAGCAGAACA GAGGAGGGTCGCGGGAGGCCTAAGAAGCACCCAGGATCCTTCCAGTGGGAAAGCTGAGGA GATTTCTGAATTCTGGGGAGAGGAGAAAGATTTCCAAAGAGGAGGCGTGGCTGTTGTAGT TTCAAGGACCGCCGCGTGTCCATCCTGTGTTGCAAATTCTGTAAACAAGTGCTCAGCTAT AGAGGAATGAAGGCTGTTTTGCTGGGCGACACTGAAATAGACCTTTTCTCTACAGACATC CCTCCTACCAATGCAGTGGACTTCATTGGAAGATGCTATTTCACTGAAATCTGCAAATGT AAACTGAAGGACATCGCATGTTTAAAATGTGGGAATATTGTAGGTTATCATGTGATTGTT CCGTGTTGTTCCTGCCTTCTTTCCTGCAACAATGGACACTTCTGGATATTTCACAGCCAG GCGGTTTATGGTATTAACAGACTCGACTCTACTGGCGTAAACTTCCTACTTTGGGGCAAC TTGCCAGAGATAGAAGAGAGTACAGATGAAGACATGTTAGATATCTCAGCAGAGGAGTGT ATTAGATGAATAGAATTATGATATATATATCTAATTTACTTTTTCCTATTTAAAATATAT ATTAATGGATCAATTTCTAAATTGTTAGTGAGAATTTGCCAGTGATTTCTTTTTTCCAAA ATCAAAAAATGGGGCATTTGTTGATTTATTTATTTATTGTCTCGAATGAATTCCCTGTGT GGTTCTTTTCTTCTGCTTCTACTTCTAGCCTTCCTCTCTTCCATCCATCCCTCTGCTTGG TATAAGTGTATTCTGTATTCTTTTTTTTTTTAAGTGTATTCTTAAATTCAGACAGTAGAA GATTCTTTCACGTGTCACTCAGCTATCTCCCAATCTGGGGAAGTTTTTCTTACAACAAGA TGCCAGATGCCGTTAATTTTACATTCCTAAATAAGCAGCATAACTATCCACCACATACAT ATCACCATGCATAAATCCATTATATGAATCCATGTGTAAAACCATGCATTTAAGCAGGCA TATATGGGTGAAGCTCAGCCGGGAATTAAAGCTTAACAGGGAATTTTCCGTGGTCCAGTA TCTATGGGTACTGGCTAGCATATGTTATACTGGTGGTAACCATGTTACTATGGGACAAGA CTTTGTGAATCAGCAAATAGAATAAATTAAAACTTTAAAAATAAAATGATGGAAGAAACC CTCTTGATTCCTCAGCATGATATTAGATGTATAAATTTGTCAGAAAATGATCAATATATA CTGTGTATCAATATTATTTATTTACATTCCTCTAAAGTCATATGGATAGTGTATTATGAA AACCAGATAAACTGAACCTCCATCTTTAACTTATCCCATCCTCTAGGGCTTTCTCTGTAA ATAGCAAATTTTAGATGAGTGGTCTCAGTTCCAATTCTTAGACAGAAAAAAAAGGAAAGA AGTGGCTTGCTTATGCCTTTGTACATTGTAAAGAGGTGGGGGGTTTTTCTTAATTTTGTT TAGTTTGGAGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCACGAGGGAGAGCCGAGGGGAGAGAGACGCGAGAGGAACCGCGCGAGAGCCCGCACG CTAAGGGCTGGGGGCTGCGGGGAGAGAAGTGAAGCGGTGGGCCCGCGAACGAGCAGAACA GAGGAGGGTCGCGGGAGGCCTAAGAAGCACCCAGGATCCTTCCAGTGGGAAAGCTGAGGA GATTTCTGAATTCTGGGGAGAGGAGAAAGATTTCCAAAGAGGAGGCGTGGCTGTTGTAGT TTCAAGGACCGCCGCGTGTCCATCCTGTGTTGCAAATTCTGTAAACAAGTGCTCAGCTAT AGAGGAATGAAGGCTGTTTTGCTGGGCGACACTGAAATAGACCTTTTCTCTACAGACATC CCTCCTACCAATGCAGTGGACTTCATTGGAAGATGCTATTTCACTGAAATCTGCAAATGT AAACTGAAGGACATCGCATGTTTAAAATGTGGGAATATTGTAGGTTATCATGTGATTGTT CCGTGTTGTTCCTGCCTTCTTTCCTGCAACAATGGACACTTCTGGATATTTCACAGCCAG GCGGTTTATGGTATTAACAGACTCGACTCTACTGGCGTAAACTTCCTACTTTGGGGCAAC TTGCCAGAGATAGAAGAGAGTACAGATGAAGACATGTTAGATATCTCAGCAGAGGAGTGT ATTAGATGAATAGAATTATGATATATATATCTAATTTACTTTTTCCTATTTAAAATATAT ATTAATGGATCAATTTCTAAATTGTTAGTGAGAATTTGCCAGTGATTTCTTTTTTCCAAA ATCAAAAAATGGGGCATTTGTTGATTTATTTATTTATTGTCTCGAATGAATTCCCTGTGT GGTTCTTTTCTTCTGCTTCTACTTCTAGCCTTCCTCTCTTCCATCCATCCCTCTGCTTGG TATAAGTGTATTCTGTATTCTTTTTTTTTTTAAGTGTATTCTTAAATTCAGACAGTAGAA GATTCTTTCACGTGTCACTCAGCTATCTCCCAATCTGGGGAAGTTTTTCTTACAACAAGA TGCCAGATGCCGTTAATTTTACATTCCTAAATAAGCAGCATAACTATCCACCACATACAT ATCACCATGCATAAATCCATTATATGAATCCATGTGTAAAACCATGCATTTAAGCAGGCA TATATGGGTGAAGCTCAGCCGGGAATTAAAGCTTAACAGGGAATTTTCCGTGGTCCAGTA TCTATGGGTACTGGCTAGCATATGTTATACTGGTGGTAACCATGTTACTATGGGACAAGA CTTTGTGAATCAGCAAATAGAATAAATTAAAACTTTAAAAATAAAATGATGGAAGAAACC CTCTTGATTCCTCAGCATGATATTAGATGTATAAATTTGTCAGAAAATGATCAATATATA CTGTGTATCAATATTATTTATTTACATTCCTCTAAAGTCATATGGATAGTGTATTATGAA AACCAGATAAACTGAACCTCCATCTTTAACTTATCCCATCCTCTAGGGCTTTCTCTGTAA ATAGCAAATTTTAGATGAGTGGTCTCAGTTCCAATTCTTAGACAGAAAAAAAAGGAAAGA AGTGGCTTGCTTATGCCTTTGTACATTGTAAAGAGGTGGGGGGTTTTTCTTAATTTTGTT TAGTTTGGAGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 230-371, gnl|bosTau2|chr16 (873122-872981) | |
| 230-371, gnl|canFam2|chr38 (5505076-5504893) | |
| 230-371, gnl|canFam2|chr38 (5505076-5504912) | |
| 230-371, gnl|danRer3|chr11 (23485776-23485935) | |
| 230-371, gnl|danRer3|chr11 (23485776-23485935) | |
| 230-371, gnl|fr1|chrUn (3690669-3690486) | |
| 230-371, gnl|fr1|chrUn (3690669-3690507) | |
| 230-371, gnl|hg17|chr1 (120551875-120552059) | |
| 230-371, gnl|Hg17|chr1 (120551886-120552027) | |
| 230-371, gnl|hg17|chr1_random (874044-874209) | |
| 230-371, gnl|loxAfr1|scaffold_14554 (26896-26712) | |
| 230-371, gnl|loxAfr1|scaffold_14554 (26896-26731) | |
| 230-371, gnl|mm7|chr1 (131432479-131432651) | |
| 230-371, gnl|mm7|chr1 (131432479-131432644) | |
| 230-371, gnl|Mm7|chr1 (131432490-131432631) | |
| 230-371, gnl|monDom2|scaffold_13 (8176483-8176285) | |
| 230-371, gnl|monDom2|scaffold_13 (8176483-8176318) | |
| 230-371, gnl|panTro1|chr1 (186352607-186352423) | |
| 230-371, gnl|panTro1|chr1 (186352607-186352442) | |
| 230-371, gnl|rheMac2|chr1 (164148797-164148981) | |
| 230-371, gnl|rheMac2|chr1 (164148797-164148962) | |
| 230-371, gnl|rn3|chr13 (44467839-44468011) | |
| 230-371, gnl|rn3|chr13 (44467839-44468004) | |
| 230-371, gnl|tetNig1|chr11 (8835128-8834971) | |
| 574-1593, gnl|bosTau2|chr16 (862424-861447) | |
| 574-1593, gnl|Hg17|chr1 (120566533-120567437) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 230-371, gnl|bosTau2|chr16 (873122-872981) | |
| 230-371, gnl|canFam2|chr38 (5505076-5504893) | |
| 230-371, gnl|canFam2|chr38 (5505076-5504912) | |
| 230-371, gnl|danRer3|chr11 (23485776-23485935) | |
| 230-371, gnl|danRer3|chr11 (23485776-23485935) | |
| 230-371, gnl|fr1|chrUn (3690669-3690486) | |
| 230-371, gnl|fr1|chrUn (3690669-3690507) | |
| 230-371, gnl|hg17|chr1 (120551875-120552059) | |
| 230-371, gnl|Hg17|chr1 (120551886-120552027) | |
| 230-371, gnl|hg17|chr1_random (874044-874209) | |
| 230-371, gnl|loxAfr1|scaffold_14554 (26896-26712) | |
| 230-371, gnl|loxAfr1|scaffold_14554 (26896-26731) | |
| 230-371, gnl|mm7|chr1 (131432479-131432651) | |
| 230-371, gnl|mm7|chr1 (131432479-131432644) | |
| 230-371, gnl|Mm7|chr1 (131432490-131432631) | |
| 230-371, gnl|monDom2|scaffold_13 (8176483-8176285) | |
| 230-371, gnl|monDom2|scaffold_13 (8176483-8176318) | |
| 230-371, gnl|panTro1|chr1 (186352607-186352423) | |
| 230-371, gnl|panTro1|chr1 (186352607-186352442) | |
| 230-371, gnl|rheMac2|chr1 (164148797-164148981) | |
| 230-371, gnl|rheMac2|chr1 (164148797-164148962) | |
| 230-371, gnl|rn3|chr13 (44467839-44468011) | |
| 230-371, gnl|rn3|chr13 (44467839-44468004) | |
| 230-371, gnl|tetNig1|chr11 (8835128-8834971) | |
| 574-1593, gnl|bosTau2|chr16 (862424-861447) | |
| 574-1593, gnl|Hg17|chr1 (120566533-120567437) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.253582) | |
| cbl (0.229595) | |
| spl (0.143184) |