Non-Coding RNA Search

Ss1.1-Pig1-97A13.5

Sequence:


               
               GGGCTTCTTCAGCATCGACAGTGAGGAGTACGAAGCGATGCCCGTGGAGGTGAAGCTGCT
CCCCAGGAAGCTGCGGTTCTTCTGTGACCCGCGGAGGAGGGCAGAGATGCTGCAGAGCTG
GGCCGAGTGAGCAGGTGGGCGACTGCCCTTTAGGCCACCCTGGGACCAAACGGGAGCAGA
GCCTCCCATCCCCGTCCCCGCCGCCTTGTCAGAGGATCCCAAGGGCCCGTCTGCGGCAAG
TACCCCCTGCCCTCCTCTCTCTGTGCGTTGCAGCTTCGCAGCCAGCTTCCCGGCCGCGCG
GGCTTTGACTGGTGCCCCCCGTCAGGCGGGCGCCGAGACATCCCCACCCTCCGTGGATGG
AAAAGGGCCGGACCTTGTTCTCTCCCCACCGCGGACGGCAGGCTCTTAGGCTGTGTCCTC
TCCTGTCTGTGGCCGTCCTGGGAAGGGCCTGCCTTCCCGCCGCCTTGTCCTGTTTCCAGG
CTCCTCCATGGGTGCTGCTGCTCCATGAGCTCCGGTTCTCATTTAGCGGGTTCCAGTTCT
CTCCTCGGTCTAAGAAACATATGTGGGGTGTCCGTCTTCAGCCGTGGCTGATACTGTAAA
ATATTAGGGTTTCCCCCCCCTAAAGTCGTGCTTCTGAAGTGTTGGTTTGCATGAGAACCA
CCTGGGGCACTTGTCGAAGATGTACTCAGTTGGGGCCCACCCCAAACCTAGTCACTCAAT
CTGAGGATGGAGCCCCGGAATCTGCCTTTTTAAAAAGGCAGCCACCCTCCCCGGGTGGTT
CTGGTTCAGGAAGTCCTGAGGCCGAAAGGGACACACAGTCCTGCCAAGCAGTGGTCCACA
GGTCTCCTGCTCCTCTGCTTCCTCAGAGTGCTTTGGAAAACCTTGTAGCCCCTCCCACGT
TAACATCCCCAATTTCTCATGGGAAGTTTGAGTTGCCAAAGTATATACTTTCTGGTGTCA
TGTAAATATTGATATTTTAAAATAAAACTGTTACATCACTCTTTTAAACATATTCAGTAT
AATTGAAATACATAGCAATTTGACATTCATCATCCATTTACAAAAATAAATTGTTTAGTA
GTTGAAAATATCCATTTTCCTCATATGCCTATTTCCTACTGCTTTCAGCAAAGTATGCTA
TCATGTTTTTATGCTGGAAAATTTTTTCACTCAACCTATTTTCTTGCCAACAAAAGCTAT
AAATTGAAATGACTTTTTTTAGTTCAAGTGTTAACTCAGTACAGAATAAATGTTATCAAT
TATTGAAATAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTTCTTCAGCATCGACAGTGAGGAGTACGAAGCGATGCCCGTGGAGGTGAAGCTGCT
CCCCAGGAAGCTGCGGTTCTTCTGTGACCCGCGGAGGAGGGCAGAGATGCTGCAGAGCTG
GGCCGAGTGAGCAGGTGGGCGACTGCCCTTTAGGCCACCCTGGGACCAAACGGGAGCAGA
GCCTCCCATCCCCGTCCCCGCCGCCTTGTCAGAGGATCCCAAGGGCCCGTCTGCGGCAAG
TACCCCCTGCCCTCCTCTCTCTGTGCGTTGCAGCTTCGCAGCCAGCTTCCCGGCCGCGCG
GGCTTTGACTGGTGCCCCCCGTCAGGCGGGCGCCGAGACATCCCCACCCTCCGTGGATGG
AAAAGGGCCGGACCTTGTTCTCTCCCCACCGCGGACGGCAGGCTCTTAGGCTGTGTCCTC
TCCTGTCTGTGGCCGTCCTGGGAAGGGCCTGCCTTCCCGCCGCCTTGTCCTGTTTCCAGG
CTCCTCCATGGGTGCTGCTGCTCCATGAGCTCCGGTTCTCATTTAGCGGGTTCCAGTTCT
CTCCTCGGTCTAAGAAACATATGTGGGGTGTCCGTCTTCAGCCGTGGCTGATACTGTAAA
ATATTAGGGTTTCCCCCCCCTAAAGTCGTGCTTCTGAAGTGTTGGTTTGCATGAGAACCA
CCTGGGGCACTTGTCGAAGATGTACTCAGTTGGGGCCCACCCCAAACCTAGTCACTCAAT
CTGAGGATGGAGCCCCGGAATCTGCCTTTTTAAAAAGGCAGCCACCCTCCCCGGGTGGTT
CTGGTTCAGGAAGTCCTGAGGCCGAAAGGGACACACAGTCCTGCCAAGCAGTGGTCCACA
GGTCTCCTGCTCCTCTGCTTCCTCAGAGTGCTTTGGAAAACCTTGTAGCCCCTCCCACGT
TAACATCCCCAATTTCTCATGGGAAGTTTGAGTTGCCAAAGTATATACTTTCTGGTGTCA
TGTAAATATTGATATTTTAAAATAAAACTGTTACATCACTCTTTTAAACATATTCAGTAT
AATTGAAATACATAGCAATTTGACATTCATCATCCATTTACAAAAATAAATTGTTTAGTA
GTTGAAAATATCCATTTTCCTCATATGCCTATTTCCTACTGCTTTCAGCAAAGTATGCTA
TCATGTTTTTATGCTGGAAAATTTTTTCACTCAACCTATTTTCTTGCCAACAAAAGCTAT
AAATTGAAATGACTTTTTTTAGTTCAAGTGTTAACTCAGTACAGAATAAATGTTATCAAT
TATTGAAATAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               697-813, - strand, RNAz p=0.594309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               697-813, - strand, RNAz p=0.594309

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-255, gnl|bosTau2|chr13 (54288412-54288145)
               

               
               1-255, gnl|Hg17|chr7 (140805779-140806045)
               

               
               1-255, gnl|Mm7|chr6 (40325758-40326016)
               


               
               337-1270, gnl|bosTau2|chr13 (54288019-54287051)
               

               
               337-1270, gnl|Hg17|chr7 (140806171-140807199)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-255, gnl|bosTau2|chr13 (54288412-54288145)
               

               
               1-255, gnl|Hg17|chr7 (140805779-140806045)
               

               
               1-255, gnl|Mm7|chr6 (40325758-40326016)
               


               
               337-1270, gnl|bosTau2|chr13 (54288019-54287051)
               

               
               337-1270, gnl|Hg17|chr7 (140806171-140807199)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               vin (0.332557)
               

               
               cmu (0.186393)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cmu (0.186393)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	1-255, gnl\|bosTau2\|chr13 (54288412-54288145)
	1-255, gnl\|Hg17\|chr7 (140805779-140806045)
	1-255, gnl\|Mm7\|chr6 (40325758-40326016)

	337-1270, gnl\|bosTau2\|chr13 (54288019-54287051)
	337-1270, gnl\|Hg17\|chr7 (140806171-140807199)

	vin (0.332557)
	cmu (0.186393)
	eli (0.151814)
	spl (0.143184)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	che (0.136314)
	ova (0.129132)
	ret (0.128733)
	spc (0.113366)
	eje (0.0988338)