Non-Coding RNA Search

Ss1.1-Pig1-97A16.5

Sequence:


               
               TCTACAAACAGCCGGGGACCGCGGCCATGGGGGGGCTCGCAGGTGTGCTGGCGCTGTGGG
TCCTGGTGACACACGTGATGTACATGCAGGATTACTGGAGGACGTGGCTCAAGGGGCTGC
GCGGCTTCTTCTTTGTGGGAGTCCTCTTCTCTGCCATCTCCATCGCCACCTTCTGCACCT
TCCTGGCGCTGGCCATCACCGGACACCAGAGCATCACAGACCCCAACAGCTACTACCTCT
CCTGTGTCTGGAGCTTCATTTCCTTCAAGTGGGCCTTCCTACTTAGCCTCTACGCCCACC
GCTACCGGGCTGACTTTGCCGACATCAGCATCCTCAGCGATTTCTGACCCAAGGGATGAG
GTCTCTGCACCCCGGCGGTCCTCAGGACCTGGACTCAGCCTCTGAGACACCGGGTGGGCC
TGCCCCACCCCCTGGGAGCCCCAGAACCAGGGCAGAAAATACACAGCAGGAGGACGTCTG
CCTCCCTGGAAGACAGGGTCCCCTTTGGGGGAACCCTGGGTGCCATGGGGAGGGGTCCTG
CCATGTTGCTCGTCAGCCTGGCGGGTGGACAGCTTTAGACCTTTCCAAGTGGATGTTTTC
TTTGCCCTCGGTGGGTAATCTTTGTAAGCAGGGCCAGGGCAGCGGTCAAGGGGTAGGGCA
GTGGGGCCTTGACCTGTGCCCGGAGGCCAGCGGTTTGGTCCCTGCTGCCCTGGGTGCTCT
CCCTGAACCAGGGGTGGCCAAGTCAATAAGAGGGGAGGTCAAGTCAATAAGAGATCCCTG
GCAGCGCCTTCTCGACGCCCTACCCCAGCACCCCCATCCTGTTGTCCCCGAAGGGGCAGT
AGCTGAACTCCTTGGTCCCAGGGATGGTGACATTTGGCTCTTTTCCCAAGGCCTGGGGAC
TTGAGGGGAGAGTTCGGTGTCCCTCTTCCCACCCTGTTCCACGCAGCGCTGGTTCCCAAG
AGAGCGCTAGAGCTATCCTTGCCTCACCGCACGCCCCAGAGTGGGACACCCTGAACGAGG
CCAGACTGAGGGTCTTGGGGAAGGTGCTTCTGCCCCCGGAAGGGCTTTCGGGAAGGGCCC
AGCGCCTCCAGCCCTGCGTGCCCCCCTGGCCTTCTCACGCCTGTCCCTCATCAACGCCCA
GATGACCCCCGGCCCCGCGACACCTCCCAGCTCCTGCCCCTGCCCACTGCCCTTCACTTA
AGCACCTTTTAAAACCTCCCTTCTAGAGGACAAAACCTGCTTAACTGCCTACACACTGGC
CCAAGGGCTCACCTAACTCGGGAGGGAAGGGGCCACATCTTTTTATCTTCGGTTGCCATT
TTGCACGGTTTACCCCTTCCCCACCCGATGTGTCCTGCCCCTCAGCTCTTTGCCTTATCT
GTGTCACTGTCACTTTAGCAGAAATAACAGCGGCCATTTCTATCAGCCAAGCCTCTGGTG
CTTTCTTGTGGGGAGAGTGGGCAGGAAGGGTGGGTCGGTGGGTCTCCCATTGTCCATGAA
GCCATTGAAGCCATTTCCTTAGCTCAGAGGAGCCCACATGCTCTGGTGCCACCGGCAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTACAAACAGCCGGGGACCGCGGCCATGGGGGGGCTCGCAGGTGTGCTGGCGCTGTGGG
TCCTGGTGACACACGTGATGTACATGCAGGATTACTGGAGGACGTGGCTCAAGGGGCTGC
GCGGCTTCTTCTTTGTGGGAGTCCTCTTCTCTGCCATCTCCATCGCCACCTTCTGCACCT
TCCTGGCGCTGGCCATCACCGGACACCAGAGCATCACAGACCCCAACAGCTACTACCTCT
CCTGTGTCTGGAGCTTCATTTCCTTCAAGTGGGCCTTCCTACTTAGCCTCTACGCCCACC
GCTACCGGGCTGACTTTGCCGACATCAGCATCCTCAGCGATTTCTGACCCAAGGGATGAG
GTCTCTGCACCCCGGCGGTCCTCAGGACCTGGACTCAGCCTCTGAGACACCGGGTGGGCC
TGCCCCACCCCCTGGGAGCCCCAGAACCAGGGCAGAAAATACACAGCAGGAGGACGTCTG
CCTCCCTGGAAGACAGGGTCCCCTTTGGGGGAACCCTGGGTGCCATGGGGAGGGGTCCTG
CCATGTTGCTCGTCAGCCTGGCGGGTGGACAGCTTTAGACCTTTCCAAGTGGATGTTTTC
TTTGCCCTCGGTGGGTAATCTTTGTAAGCAGGGCCAGGGCAGCGGTCAAGGGGTAGGGCA
GTGGGGCCTTGACCTGTGCCCGGAGGCCAGCGGTTTGGTCCCTGCTGCCCTGGGTGCTCT
CCCTGAACCAGGGGTGGCCAAGTCAATAAGAGGGGAGGTCAAGTCAATAAGAGATCCCTG
GCAGCGCCTTCTCGACGCCCTACCCCAGCACCCCCATCCTGTTGTCCCCGAAGGGGCAGT
AGCTGAACTCCTTGGTCCCAGGGATGGTGACATTTGGCTCTTTTCCCAAGGCCTGGGGAC
TTGAGGGGAGAGTTCGGTGTCCCTCTTCCCACCCTGTTCCACGCAGCGCTGGTTCCCAAG
AGAGCGCTAGAGCTATCCTTGCCTCACCGCACGCCCCAGAGTGGGACACCCTGAACGAGG
CCAGACTGAGGGTCTTGGGGAAGGTGCTTCTGCCCCCGGAAGGGCTTTCGGGAAGGGCCC
AGCGCCTCCAGCCCTGCGTGCCCCCCTGGCCTTCTCACGCCTGTCCCTCATCAACGCCCA
GATGACCCCCGGCCCCGCGACACCTCCCAGCTCCTGCCCCTGCCCACTGCCCTTCACTTA
AGCACCTTTTAAAACCTCCCTTCTAGAGGACAAAACCTGCTTAACTGCCTACACACTGGC
CCAAGGGCTCACCTAACTCGGGAGGGAAGGGGCCACATCTTTTTATCTTCGGTTGCCATT
TTGCACGGTTTACCCCTTCCCCACCCGATGTGTCCTGCCCCTCAGCTCTTTGCCTTATCT
GTGTCACTGTCACTTTAGCAGAAATAACAGCGGCCATTTCTATCAGCCAAGCCTCTGGTG
CTTTCTTGTGGGGAGAGTGGGCAGGAAGGGTGGGTCGGTGGGTCTCCCATTGTCCATGAA
GCCATTGAAGCCATTTCCTTAGCTCAGAGGAGCCCACATGCTCTGGTGCCACCGGCAAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BUB3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BUB3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               250-1304, - strand, RNAz p=0.996104

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               250-1304, - strand, RNAz p=0.996104

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               211-1083, gnl|bosTau2|chr5 (24787484-24788345)
               

               
               211-1083, gnl|Hg17|chr12 (46460195-46461326)
               

               
               211-1083, gnl|Mm7|chr15 (97791162-97792043)
               


               
               1090-1482, gnl|bosTau2|chr5 (24788384-24788784)
               

               
               1090-1482, gnl|Hg17|chr12 (46461374-46461797)
               

               
               1090-1482, gnl|Mm7|chr15 (97792062-97792439)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               211-1083, gnl|bosTau2|chr5 (24787484-24788345)
               

               
               211-1083, gnl|Hg17|chr12 (46460195-46461326)
               

               
               211-1083, gnl|Mm7|chr15 (97791162-97792043)
               


               
               1090-1482, gnl|bosTau2|chr5 (24788384-24788784)
               

               
               1090-1482, gnl|Hg17|chr12 (46461374-46461797)
               

               
               1090-1482, gnl|Mm7|chr15 (97792062-97792439)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fce (0.543183)
               

               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               eli (0.151814)
               

               
               ebs (0.118301)

	211-1083, gnl\|bosTau2\|chr5 (24787484-24788345)
	211-1083, gnl\|Hg17\|chr12 (46460195-46461326)
	211-1083, gnl\|Mm7\|chr15 (97791162-97792043)

	1090-1482, gnl\|bosTau2\|chr5 (24788384-24788784)
	1090-1482, gnl\|Hg17\|chr12 (46461374-46461797)
	1090-1482, gnl\|Mm7\|chr15 (97792062-97792439)

	fce (0.543183)
	hyp (0.285673)
	ece (0.229305)
	nco (0.161734)
	csp (0.161186)
	eli (0.151814)
	ebs (0.118301)