Ss1.1-Pig1-97H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGACCGCTTCAGCGGGGAGATCCCTGATGACCAGATGGCGCACAGCTCCTTTTTCCCCG ATGAGTACTTCACCTGCTCCTCCCTGTGCCTCAGCTGCGGGGCTGGATGTAAGAACAGCA TGAATCACGGGAAAGAAGGAGTACCTCATGAAGCCAAGAGCCGCTGCAGATACTCCCACC AGTATGACAACCGCGTTTTCACCTGCAAGGCCTGCTACGAGAGAGGCAATGAAGTCAGCG TGGTGCCCAAGACGGCTGCTTCCACCGACTCTCCCTGGATGGGTCTTGCAAAATATGCCT GGTCCGGGTATGTGATCGAATGTCCTAACTGTGGTGTGGTGTATCGTAGCCGGCAGTACT GGTTTGGGAACCAAGATCCTGTGGATACGGTGGTGCGGACAGAGATTGTGCATGTGTGGC CTGGAACAGATGGATTTCTGAAGGACAACAACAACGCTGCCCAGCGCCTCTTGGATGGAA TGAACTTCATGGCCCAATCGGTGTCTGAGCTTAGCCTTGGGCCCACCAAGGCTGTGACGT CCTGGCTGACAGACCAGATCGCCCCTGCCTACTGGAGGCCCAACTCCCAGATCCTGAGCT GCAACAAGTGCGCTACATCCTTTAAAGATAACGACACCAAGCATCACTGCCGGGCCTGTG GGGAGGGCTTCTGTGACAGCTGTTCGTCCAAGACCCGGCCAGTGCCTGAGCGGGGCTGGG GCCCTGCACCCGTGCGGGTGTGTGACAACTGCTACGAGGCCAGGAATGTCCAGTTAGCTG TTACCGAGGCACAGGCGGACGATGAAGGCGGGACGCTGATTGCTCGGAAGGTGGGCGAGG CCGTGCAGAACACTTTGGGAGCCGTGGTGACAGCCATTGACATACCACTAGGTCTGGTGA AGGATGCGGCCAGGCCGGCGTACTGGGTCCCTGACCATGAGATCCTGCACTGCCACAACT GCCGGAAGGAGTTCAGTGTCAAGCTTTCCAAGCACCACTGCCGGGCCTGCGGACAGGGCT TCTGTGACGAGTGTTCCCATGACCGCCGGGCTGTCCCCTCTCGAGGCTGGGACCATCCTG TCCGAGTCTGCTTTAACTGCAATAAAAAGCCCGGTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGACCGCTTCAGCGGGGAGATCCCTGATGACCAGATGGCGCACAGCTCCTTTTTCCCCG ATGAGTACTTCACCTGCTCCTCCCTGTGCCTCAGCTGCGGGGCTGGATGTAAGAACAGCA TGAATCACGGGAAAGAAGGAGTACCTCATGAAGCCAAGAGCCGCTGCAGATACTCCCACC AGTATGACAACCGCGTTTTCACCTGCAAGGCCTGCTACGAGAGAGGCAATGAAGTCAGCG TGGTGCCCAAGACGGCTGCTTCCACCGACTCTCCCTGGATGGGTCTTGCAAAATATGCCT GGTCCGGGTATGTGATCGAATGTCCTAACTGTGGTGTGGTGTATCGTAGCCGGCAGTACT GGTTTGGGAACCAAGATCCTGTGGATACGGTGGTGCGGACAGAGATTGTGCATGTGTGGC CTGGAACAGATGGATTTCTGAAGGACAACAACAACGCTGCCCAGCGCCTCTTGGATGGAA TGAACTTCATGGCCCAATCGGTGTCTGAGCTTAGCCTTGGGCCCACCAAGGCTGTGACGT CCTGGCTGACAGACCAGATCGCCCCTGCCTACTGGAGGCCCAACTCCCAGATCCTGAGCT GCAACAAGTGCGCTACATCCTTTAAAGATAACGACACCAAGCATCACTGCCGGGCCTGTG GGGAGGGCTTCTGTGACAGCTGTTCGTCCAAGACCCGGCCAGTGCCTGAGCGGGGCTGGG GCCCTGCACCCGTGCGGGTGTGTGACAACTGCTACGAGGCCAGGAATGTCCAGTTAGCTG TTACCGAGGCACAGGCGGACGATGAAGGCGGGACGCTGATTGCTCGGAAGGTGGGCGAGG CCGTGCAGAACACTTTGGGAGCCGTGGTGACAGCCATTGACATACCACTAGGTCTGGTGA AGGATGCGGCCAGGCCGGCGTACTGGGTCCCTGACCATGAGATCCTGCACTGCCACAACT GCCGGAAGGAGTTCAGTGTCAAGCTTTCCAAGCACCACTGCCGGGCCTGCGGACAGGGCT TCTGTGACGAGTGTTCCCATGACCGCCGGGCTGTCCCCTCTCGAGGCTGGGACCATCCTG TCCGAGTCTGCTTTAACTGCAATAAAAAGCCCGGTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 86-210, gnl|bosTau2|chr10 (59502320-59502198) | |
| 86-210, gnl|canFam2|chr8 (49394945-49395106) | |
| 86-210, gnl|danRer3|chr20 (38375836-38375975) | |
| 86-210, gnl|dasNov1|scaffold_6281 (15905-15761) | |
| 86-210, gnl|echTel1|scaffold_315489 (40430-40263) | |
| 86-210, gnl|fr1|chrUn (156733099-156732964) | |
| 86-210, gnl|galGal2|chr5 (23701026-23700890) | |
| 86-210, gnl|hg17|chr14 (72515292-72515456) | |
| 86-210, gnl|Hg17|chr14 (72515443-72515321) | |
| 86-210, gnl|loxAfr1|scaffold_10205 (70491-70654) | |
| 86-210, gnl|mm7|chr12 (81551607-81551773) | |
| 86-210, gnl|Mm7|chr12 (81551760-81551637) | |
| 86-210, gnl|monDom2|scaffold_8 (62304151-62304016) | |
| 86-210, gnl|oryCun1|scaffold_195831 (9814-9666) | |
| 86-210, gnl|panTro1|chr15 (72292498-72292662) | |
| 86-210, gnl|rheMac2|chr7 (136074602-136074766) | |
| 86-210, gnl|rn3|chr6 (107511143-107511304) | |
| 86-210, gnl|tetNig1|chr14 (6648633-6648761) | |
| 86-210, gnl|xenTro1|scaffold_218 (1644317-1644474) | |
| 307-425, gnl|bosTau2|chr10 (59501466-59501348) | |
| 307-425, gnl|canFam2|chr8 (49394101-49394241) | |
| 307-425, gnl|danRer3|chr20 (38374826-38374973) | |
| 307-425, gnl|dasNov1|scaffold_6281 (16719-16579) | |
| 307-425, gnl|echTel1|scaffold_315489 (42079-41939) | |
| 307-425, gnl|fr1|chrUn (156733464-156733324) | |
| 307-425, gnl|galGal2|chr5 (23701874-23701731) | |
| 307-425, gnl|hg17|chr14 (72514381-72514521) | |
| 307-425, gnl|Hg17|chr14 (72514506-72514388) | |
| 307-425, gnl|loxAfr1|scaffold_10205 (69661-69801) | |
| 307-425, gnl|mm7|chr12 (81550973-81551112) | |
| 307-425, gnl|Mm7|chr12 (81551098-81550980) | |
| 307-425, gnl|monDom2|scaffold_8 (62304963-62304823) | |
| 307-425, gnl|oryCun1|scaffold_195831 (10574-10435) | |
| 307-425, gnl|panTro1|chr15 (72291543-72291683) | |
| 307-425, gnl|rheMac2|chr7 (136073014-136073154) | |
| 307-425, gnl|rn3|chr6 (107510439-107510578) | |
| 307-425, gnl|tetNig1|chr14 (6648265-6648405) | |
| 307-425, gnl|xenTro1|scaffold_218 (1643289-1643425) | |
| 596-777, gnl|bosTau2|chr10 (59499065-59498884) | |
| 596-777, gnl|canFam2|chr8 (49390910-49391108) | |
| 596-777, gnl|danRer3|chr20 (38374314-38374504) | |
| 596-777, gnl|dasNov1|scaffold_6281 (20300-20102) | |
| 596-777, gnl|echTel1|scaffold_315489 (44898-44700) | |
| 596-777, gnl|fr1|chrUn (156734079-156733894) | |
| 596-777, gnl|galGal2|chr5 (23703376-23703184) | |
| 596-777, gnl|hg17|chr14 (72511234-72511432) | |
| 596-777, gnl|Hg17|chr14 (72511421-72511240) | |
| 596-777, gnl|loxAfr1|scaffold_10205 (66646-66844) | |
| 596-777, gnl|mm7|chr12 (81547497-81547695) | |
| 596-777, gnl|Mm7|chr12 (81547684-81547503) | |
| 596-777, gnl|monDom2|scaffold_8 (62309179-62308983) | |
| 596-777, gnl|oryCun1|scaffold_195831 (13965-13768) | |
| 596-777, gnl|panTro1|chr15 (72288381-72288579) | |
| 596-777, gnl|rheMac2|chr7 (136069623-136069821) | |
| 596-777, gnl|rn3|chr6 (107507309-107507507) | |
| 596-777, gnl|tetNig1|chr14 (6647775-6647952) | |
| 596-777, gnl|xenTro1|scaffold_218 (1641536-1641731) | |
| 890-1116, gnl|bosTau2|chr10 (59496839-59496613) | |
| 890-1116, gnl|Hg17|chr14 (72507577-72507351) | |
| 890-1116, gnl|Mm7|chr12 (81544154-81543928) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 86-210, gnl|bosTau2|chr10 (59502320-59502198) | |
| 86-210, gnl|canFam2|chr8 (49394945-49395106) | |
| 86-210, gnl|danRer3|chr20 (38375836-38375975) | |
| 86-210, gnl|dasNov1|scaffold_6281 (15905-15761) | |
| 86-210, gnl|echTel1|scaffold_315489 (40430-40263) | |
| 86-210, gnl|fr1|chrUn (156733099-156732964) | |
| 86-210, gnl|galGal2|chr5 (23701026-23700890) | |
| 86-210, gnl|hg17|chr14 (72515292-72515456) | |
| 86-210, gnl|Hg17|chr14 (72515443-72515321) | |
| 86-210, gnl|loxAfr1|scaffold_10205 (70491-70654) | |
| 86-210, gnl|mm7|chr12 (81551607-81551773) | |
| 86-210, gnl|Mm7|chr12 (81551760-81551637) | |
| 86-210, gnl|monDom2|scaffold_8 (62304151-62304016) | |
| 86-210, gnl|oryCun1|scaffold_195831 (9814-9666) | |
| 86-210, gnl|panTro1|chr15 (72292498-72292662) | |
| 86-210, gnl|rheMac2|chr7 (136074602-136074766) | |
| 86-210, gnl|rn3|chr6 (107511143-107511304) | |
| 86-210, gnl|tetNig1|chr14 (6648633-6648761) | |
| 86-210, gnl|xenTro1|scaffold_218 (1644317-1644474) | |
| 307-425, gnl|bosTau2|chr10 (59501466-59501348) | |
| 307-425, gnl|canFam2|chr8 (49394101-49394241) | |
| 307-425, gnl|danRer3|chr20 (38374826-38374973) | |
| 307-425, gnl|dasNov1|scaffold_6281 (16719-16579) | |
| 307-425, gnl|echTel1|scaffold_315489 (42079-41939) | |
| 307-425, gnl|fr1|chrUn (156733464-156733324) | |
| 307-425, gnl|galGal2|chr5 (23701874-23701731) | |
| 307-425, gnl|hg17|chr14 (72514381-72514521) | |
| 307-425, gnl|Hg17|chr14 (72514506-72514388) | |
| 307-425, gnl|loxAfr1|scaffold_10205 (69661-69801) | |
| 307-425, gnl|mm7|chr12 (81550973-81551112) | |
| 307-425, gnl|Mm7|chr12 (81551098-81550980) | |
| 307-425, gnl|monDom2|scaffold_8 (62304963-62304823) | |
| 307-425, gnl|oryCun1|scaffold_195831 (10574-10435) | |
| 307-425, gnl|panTro1|chr15 (72291543-72291683) | |
| 307-425, gnl|rheMac2|chr7 (136073014-136073154) | |
| 307-425, gnl|rn3|chr6 (107510439-107510578) | |
| 307-425, gnl|tetNig1|chr14 (6648265-6648405) | |
| 307-425, gnl|xenTro1|scaffold_218 (1643289-1643425) | |
| 596-777, gnl|bosTau2|chr10 (59499065-59498884) | |
| 596-777, gnl|canFam2|chr8 (49390910-49391108) | |
| 596-777, gnl|danRer3|chr20 (38374314-38374504) | |
| 596-777, gnl|dasNov1|scaffold_6281 (20300-20102) | |
| 596-777, gnl|echTel1|scaffold_315489 (44898-44700) | |
| 596-777, gnl|fr1|chrUn (156734079-156733894) | |
| 596-777, gnl|galGal2|chr5 (23703376-23703184) | |
| 596-777, gnl|hg17|chr14 (72511234-72511432) | |
| 596-777, gnl|Hg17|chr14 (72511421-72511240) | |
| 596-777, gnl|loxAfr1|scaffold_10205 (66646-66844) | |
| 596-777, gnl|mm7|chr12 (81547497-81547695) | |
| 596-777, gnl|Mm7|chr12 (81547684-81547503) | |
| 596-777, gnl|monDom2|scaffold_8 (62309179-62308983) | |
| 596-777, gnl|oryCun1|scaffold_195831 (13965-13768) | |
| 596-777, gnl|panTro1|chr15 (72288381-72288579) | |
| 596-777, gnl|rheMac2|chr7 (136069623-136069821) | |
| 596-777, gnl|rn3|chr6 (107507309-107507507) | |
| 596-777, gnl|tetNig1|chr14 (6647775-6647952) | |
| 596-777, gnl|xenTro1|scaffold_218 (1641536-1641731) | |
| 890-1116, gnl|bosTau2|chr10 (59496839-59496613) | |
| 890-1116, gnl|Hg17|chr14 (72507577-72507351) | |
| 890-1116, gnl|Mm7|chr12 (81544154-81543928) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.129132) | |
| jca (0.11396) |