Non-Coding RNA Search

Ss1.1-Pig1-97N14.5

Sequence:


               
               GTGTACTTACCTGGTGAGCGCAGTAAGCAGGAGTTGTTTTGGTCTGTGGGGCTCTTGTTC
AAATCCAGTCATCCACCTTCTGCAATGCCTTGCCTAAAGAGCTATACCAAAATAGATTTG
GACATCTTTTCTCCTTTTTAATTGCAAGCACAGAAAACTAACTTGAGCTTACTAAGGTCA
AAGAAGAAATCTAAAATGGCATATTTTCCCTTCAATATAGAAAGGAGGGATACTTAGTCC
TTTCTCTCTTTTACTTGCCATGGTCCCTGTGCAAGAAGTTGTAGGCTCTGTTTTAGTTAT
CCAACATGTGTGTGGCTTATTTCGTGTAAAGCTATGTGGAAGATACATTTAGTTAAACTC
ATTGACTTGCACCCTCATATGGTGGTTCCCAGGCTAGGGGCCAAGTCAGAGCTATAGTCA
CTGGCCTGGGCCACAGCGACAGCAACTCAGGATCCGAGCTGCGACCTACTCCACAGCTCA
CAGCAACGTCAGATCCTTAACCCACTGATTGAGGCCAGGGATCGAACCCACAACCTTATG
GTTACTAGTTGAATTCGTCTCCACTGCGCCAACACGAGAACTCCAATCTCATTGTCTTTT
CTCCCTTGAAGTTTCAAAAAAAAGAGAAGAAAAACTAAAATCTTTGCTCTTTATTTCTAA
TTGTTATTTGATTTACAGCAGTTTCTAACCACACTAACAAATATCTCTAATTCTAGCCTT
GTTAAAAGGCAAATTAACATTCTATAAGCAAAAAGTTCTGTATCCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTACTTACCTGGTGAGCGCAGTAAGCAGGAGTTGTTTTGGTCTGTGGGGCTCTTGTTC
AAATCCAGTCATCCACCTTCTGCAATGCCTTGCCTAAAGAGCTATACCAAAATAGATTTG
GACATCTTTTCTCCTTTTTAATTGCAAGCACAGAAAACTAACTTGAGCTTACTAAGGTCA
AAGAAGAAATCTAAAATGGCATATTTTCCCTTCAATATAGAAAGGAGGGATACTTAGTCC
TTTCTCTCTTTTACTTGCCATGGTCCCTGTGCAAGAAGTTGTAGGCTCTGTTTTAGTTAT
CCAACATGTGTGTGGCTTATTTCGTGTAAAGCTATGTGGAAGATACATTTAGTTAAACTC
ATTGACTTGCACCCTCATATGGTGGTTCCCAGGCTAGGGGCCAAGTCAGAGCTATAGTCA
CTGGCCTGGGCCACAGCGACAGCAACTCAGGATCCGAGCTGCGACCTACTCCACAGCTCA
CAGCAACGTCAGATCCTTAACCCACTGATTGAGGCCAGGGATCGAACCCACAACCTTATG
GTTACTAGTTGAATTCGTCTCCACTGCGCCAACACGAGAACTCCAATCTCATTGTCTTTT
CTCCCTTGAAGTTTCAAAAAAAAGAGAAGAAAAACTAAAATCTTTGCTCTTTATTTCTAA
TTGTTATTTGATTTACAGCAGTTTCTAACCACACTAACAAATATCTCTAATTCTAGCCTT
GTTAAAAGGCAAATTAACATTCTATAAGCAAAAAGTTCTGTATCCTAG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               2-368, gnl|bosTau2|chr1 (48994931-48995299)
               


               
               585-768, gnl|bosTau2|chr1 (48995286-48995468)
               

               
               585-768, gnl|canFam2|chr34 (24159768-24160007)
               

               
               585-768, gnl|dasNov1|scaffold_49276 (4035-3796)
               

               
               585-768, gnl|echTel1|scaffold_268299 (10335-10134)
               

               
               585-768, gnl|hg17|chr3 (190080821-190081060)
               

               
               585-768, gnl|loxAfr1|scaffold_13814 (49760-49929)
               

               
               585-768, gnl|mm7|chr16 (24645320-24645487)
               

               
               585-768, gnl|oryCun1|scaffold_175821 (89298-89086)
               

               
               585-768, gnl|panTro1|chr2_random (27071017-27071256)
               

               
               585-768, gnl|rheMac2|chr2 (181215177-181215421)
               

               
               585-768, gnl|rn3|chr11 (78016174-78016007)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-368, gnl|bosTau2|chr1 (48994931-48995299)
               


               
               585-768, gnl|bosTau2|chr1 (48995286-48995468)
               

               
               585-768, gnl|canFam2|chr34 (24159768-24160007)
               

               
               585-768, gnl|dasNov1|scaffold_49276 (4035-3796)
               

               
               585-768, gnl|echTel1|scaffold_268299 (10335-10134)
               

               
               585-768, gnl|hg17|chr3 (190080821-190081060)
               

               
               585-768, gnl|loxAfr1|scaffold_13814 (49760-49929)
               

               
               585-768, gnl|mm7|chr16 (24645320-24645487)
               

               
               585-768, gnl|oryCun1|scaffold_175821 (89298-89086)
               

               
               585-768, gnl|panTro1|chr2_random (27071017-27071256)
               

               
               585-768, gnl|rheMac2|chr2 (181215177-181215421)
               

               
               585-768, gnl|rn3|chr11 (78016174-78016007)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	2-368, gnl\|bosTau2\|chr1 (48994931-48995299)

	585-768, gnl\|bosTau2\|chr1 (48995286-48995468)
	585-768, gnl\|canFam2\|chr34 (24159768-24160007)
	585-768, gnl\|dasNov1\|scaffold_49276 (4035-3796)
	585-768, gnl\|echTel1\|scaffold_268299 (10335-10134)
	585-768, gnl\|hg17\|chr3 (190080821-190081060)
	585-768, gnl\|loxAfr1\|scaffold_13814 (49760-49929)
	585-768, gnl\|mm7\|chr16 (24645320-24645487)
	585-768, gnl\|oryCun1\|scaffold_175821 (89298-89086)
	585-768, gnl\|panTro1\|chr2_random (27071017-27071256)
	585-768, gnl\|rheMac2\|chr2 (181215177-181215421)
	585-768, gnl\|rn3\|chr11 (78016174-78016007)