Non-Coding RNA Search

Ss1.1-Pig1-98G21.5

Sequence:


               
               CCGCTGGGTTTGGCTCCTTCGAGCTGGTCAGCCAGATCTCCACTGAGGACCTTCTCCGCA
TCGGAGTCACTCTGGCGGGACACCAGAAGAAAATCCTGGCCAGTGTTCAGCACATGAAGT
TCCCAGGCCAAGCCTGGAGCCCCAGGCGGGTCGGGAGCACCAGCCCCCCAGTACTGACCT
GTGCCTCCTCGCCTGCCCCACAGCTCTGGAGCAGCGGGAACCCCCACGTGGGGGACACCG
TTCCCCTTTTTCCTGGGGCAGAGTCGGATAGGGACCCAAGAGGCCCCCCATCCTCAAGCC
CCACTGGATTGCACTTTGAACCCATGGGGGCAGGGAGCTGGCAATTTGGAGAGACAGGAT
TTGGCAATTCTGTCCCACCAGCGTGTAGAAATCACATGCCTCCTAGGCGGGGAACCCCAG
ACCAAGGGTGTGGGAGTCCTGCCCTCAGGACCGGGTGTGACCAGAGGAAAAGAAGGGCCC
GGAATCGGCCAGCATGCCTGGGTGGCTGGGCACGATCCCCACAGCCTCCCCCTGATCCCC
AACTAGGGCCCCCAGATACCCCTCCTCACCTTGAAAGGGCCATGGCCCTGCAGACCAAAG
AGAAGGAGGGGACTAGTCTGTGAGCTCAGGAGCTCAGCTCTGCGGCCGGCAGGAGGTGGG
AAGGGACTTCACGACCCAGTGACAAAAACCATTGAACTGGGGTGTTCCAGCCTTGCTGCT
GTCTCCACCGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCTGGGTTTGGCTCCTTCGAGCTGGTCAGCCAGATCTCCACTGAGGACCTTCTCCGCA
TCGGAGTCACTCTGGCGGGACACCAGAAGAAAATCCTGGCCAGTGTTCAGCACATGAAGT
TCCCAGGCCAAGCCTGGAGCCCCAGGCGGGTCGGGAGCACCAGCCCCCCAGTACTGACCT
GTGCCTCCTCGCCTGCCCCACAGCTCTGGAGCAGCGGGAACCCCCACGTGGGGGACACCG
TTCCCCTTTTTCCTGGGGCAGAGTCGGATAGGGACCCAAGAGGCCCCCCATCCTCAAGCC
CCACTGGATTGCACTTTGAACCCATGGGGGCAGGGAGCTGGCAATTTGGAGAGACAGGAT
TTGGCAATTCTGTCCCACCAGCGTGTAGAAATCACATGCCTCCTAGGCGGGGAACCCCAG
ACCAAGGGTGTGGGAGTCCTGCCCTCAGGACCGGGTGTGACCAGAGGAAAAGAAGGGCCC
GGAATCGGCCAGCATGCCTGGGTGGCTGGGCACGATCCCCACAGCCTCCCCCTGATCCCC
AACTAGGGCCCCCAGATACCCCTCCTCACCTTGAAAGGGCCATGGCCCTGCAGACCAAAG
AGAAGGAGGGGACTAGTCTGTGAGCTCAGGAGCTCAGCTCTGCGGCCGGCAGGAGGTGGG
AAGGGACTTCACGACCCAGTGACAAAAACCATTGAACTGGGGTGTTCCAGCCTTGCTGCT
GTCTCCACCGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               126-473, - strand, RNAz p=0.992435
               

               
               512-631, - strand, RNAz p=0.559002

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               126-473, - strand, RNAz p=0.992435
               

               
               512-631, - strand, RNAz p=0.559002

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               47-632, gnl|bosTau2|chr25 (32236276-32236860)
               

               
               47-632, gnl|Hg17|chr7 (100045863-100045355)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-632, gnl|bosTau2|chr25 (32236276-32236860)
               

               
               47-632, gnl|Hg17|chr7 (100045863-100045355)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cov (0.264306)
               

               
               nje (0.16592)
               

               
               cly (0.120642)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               nje (0.16592)
               

               
               cly (0.120642)

	126-473, - strand, RNAz p=0.992435
	512-631, - strand, RNAz p=0.559002

	47-632, gnl\|bosTau2\|chr25 (32236276-32236860)
	47-632, gnl\|Hg17\|chr7 (100045863-100045355)