Non-Coding RNA Search

Ss1.1-Pig1-99K10.5

Sequence:


               
               GATGGCCTTCACCAAGATGGACCCAAGCTGTACTGTGGGGTTCTATGCTGGAGACAGGAA
GGAGTTTGAGACGCTCTGCTCAGAGCTGACCAGGGTCCTCAGCTCCTCCTCAGCCACAGA
GCGGTACCCCATGTTCACCTTGGTTGAGGGCCATGCTCAGGACCACAGCCTGGATGACCT
CTGCTCCCAGCCCTCCCAGCCAACACTGCGGCTCCCTCGCACAGGCCGGCTCCTCAAGGC
CAAACGCCCAAGCTCTGAGGACTTTGTGTTTTTATAAAGGGAAGGGATGAGGGAAAGACA
CACCCCTATTTATTTTTTTATTTATGTCATGCTGGGTGTGGGAGCTTCAACTCCCCTCGG
ACAAGTGCAGCTGAGACCAGTCCAGGAAGCCTCTGGGCTGGGGCCATTCAGCCAGGAACA
GAGCCTGCACACCTGCCTCCCACCAGCTGGGCCCTCCTCACAGGGCAGGGTGGGAGGGAG
GGCCCCCGGGCACTCACTCAGGGCCTGACTCAGTACTGTAGTTTGCACTGGACCGCCCAC
GCCCCGCACTGGCCCCAAAGACCCGTCCTGCCAAAGCAGGGAGTGGGGATCTGTGGCCGC
TGGGGGCTAATAAAGCTGTTTGACTTGATCTTGGCTATGGCTAGGTCCAGCATTTGAGGG
ATGGGGCTCAAGGTGTGTCTCCAAGTTATCGGGGGAGGCTTGTTGAGTAAGCCTCAGTTT
TCACATCTATAAGATGGGAAAACTCTCTTGCCCACAGGTAGTCAGGAAGGTTATAGTTGG
CAGGAGGGCTGGGCATCCAGGGGCTTGATTGAAGGAGAGGAGCCAGGGCTCCTGTGGGCT
CCCTCAAGATCAGGGGCTGCTCTTGGGCCCCTGCTGCTTCCTCTGTTGTCGGCCCAGCTG
GCGGAAGTGCAGCCGTTTGGGGTTGAGGCCAAAGGCCTGCAGTCTCTGGCGGCTAAACTC
ACGTCCACCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGCCTTCACCAAGATGGACCCAAGCTGTACTGTGGGGTTCTATGCTGGAGACAGGAA
GGAGTTTGAGACGCTCTGCTCAGAGCTGACCAGGGTCCTCAGCTCCTCCTCAGCCACAGA
GCGGTACCCCATGTTCACCTTGGTTGAGGGCCATGCTCAGGACCACAGCCTGGATGACCT
CTGCTCCCAGCCCTCCCAGCCAACACTGCGGCTCCCTCGCACAGGCCGGCTCCTCAAGGC
CAAACGCCCAAGCTCTGAGGACTTTGTGTTTTTATAAAGGGAAGGGATGAGGGAAAGACA
CACCCCTATTTATTTTTTTATTTATGTCATGCTGGGTGTGGGAGCTTCAACTCCCCTCGG
ACAAGTGCAGCTGAGACCAGTCCAGGAAGCCTCTGGGCTGGGGCCATTCAGCCAGGAACA
GAGCCTGCACACCTGCCTCCCACCAGCTGGGCCCTCCTCACAGGGCAGGGTGGGAGGGAG
GGCCCCCGGGCACTCACTCAGGGCCTGACTCAGTACTGTAGTTTGCACTGGACCGCCCAC
GCCCCGCACTGGCCCCAAAGACCCGTCCTGCCAAAGCAGGGAGTGGGGATCTGTGGCCGC
TGGGGGCTAATAAAGCTGTTTGACTTGATCTTGGCTATGGCTAGGTCCAGCATTTGAGGG
ATGGGGCTCAAGGTGTGTCTCCAAGTTATCGGGGGAGGCTTGTTGAGTAAGCCTCAGTTT
TCACATCTATAAGATGGGAAAACTCTCTTGCCCACAGGTAGTCAGGAAGGTTATAGTTGG
CAGGAGGGCTGGGCATCCAGGGGCTTGATTGAAGGAGAGGAGCCAGGGCTCCTGTGGGCT
CCCTCAAGATCAGGGGCTGCTCTTGGGCCCCTGCTGCTTCCTCTGTTGTCGGCCCAGCTG
GCGGAAGTGCAGCCGTTTGGGGTTGAGGCCAAAGGCCTGCAGTCTCTGGCGGCTAAACTC
ACGTCCACCAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14043289|gb|AAH07639.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14043289|gb|AAH07639.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               67-500, - strand, RNAz p=0.957813
               

               
               381-483, - strand, RNAz p=0.850093

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               67-500, - strand, RNAz p=0.957813
               

               
               381-483, - strand, RNAz p=0.850093

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_023008, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_023008, -

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               67-761, gnl|bosTau2|chr7 (10916966-10917665)
               

               
               67-761, gnl|Hg17|chr19 (10524535-10525526)
               

               
               67-761, gnl|Mm7|chr9 (21149790-21150408)
               


               
               323-628, gnl|bosTau2|chr17 (23737591-23737889)
               

               
               323-628, gnl|Hg17|chr19 (10524790-10525094)
               


               
               826-972, gnl|bosTau2|chr7 (10917700-10917846)
               

               
               826-972, gnl|Hg17|chr19 (10525566-10525749)
               

               
               826-972, gnl|Mm7|chr9 (21150455-21150592)

Aligned organism(s): 8 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-761, gnl|bosTau2|chr7 (10916966-10917665)
               

               
               67-761, gnl|Hg17|chr19 (10524535-10525526)
               

               
               67-761, gnl|Mm7|chr9 (21149790-21150408)
               


               
               323-628, gnl|bosTau2|chr17 (23737591-23737889)
               

               
               323-628, gnl|Hg17|chr19 (10524790-10525094)
               


               
               826-972, gnl|bosTau2|chr7 (10917700-10917846)
               

               
               826-972, gnl|Hg17|chr19 (10525566-10525749)
               

               
               826-972, gnl|Mm7|chr9 (21150455-21150592)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               duo (0.345602)
               

               
               ece (0.229305)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               ece (0.229305)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	67-500, - strand, RNAz p=0.957813
	381-483, - strand, RNAz p=0.850093

	67-761, gnl\|bosTau2\|chr7 (10916966-10917665)
	67-761, gnl\|Hg17\|chr19 (10524535-10525526)
	67-761, gnl\|Mm7\|chr9 (21149790-21150408)

	323-628, gnl\|bosTau2\|chr17 (23737591-23737889)
	323-628, gnl\|Hg17\|chr19 (10524790-10525094)

	826-972, gnl\|bosTau2\|chr7 (10917700-10917846)
	826-972, gnl\|Hg17\|chr19 (10525566-10525749)
	826-972, gnl\|Mm7\|chr9 (21150455-21150592)

	duo (0.345602)
	ece (0.229305)
	cov (0.132153)
	ese (0.126502)
	eru (0.120048)
	jej (0.0989218)