Ss1.1-Pig1-99M15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAGGGCCACGCTCTGGGTCCGGGCTCCTCGCGCGGGAGACCATGTCCAGCGGCAGCAGC TGCAGCCAGACCCCAAGCCGGGCAATCCCCACCACTCGCCGGGTGGTCCTCGGCGATGGC GTGCAGCTGCCGCCCGGGGACTACAGCACCACTCCCGGCGGCACGCTCTTCAGCACCACC CCAGGAGGTACCAGGATCATCTATGACCGGAAGTTCCTAATGGAGTGTCGGAACTCACCT GTGACCAAAACGCCCCCGAGGGACCTGCCCACCATTCCCGGGGTCACCAGCCCTGTGGGT GATGAGCCCCCCACAGATGCCAGCCAGAACCACCTGCGCAGTAGCCCAGACGACAAGCCG GCGGGGGCGGGCGGTGAAGAGTCACAGTTTGAGATGGACATTTAAAGGACCAGCCATGGG ATCGAGCAATGCCTCTGGGCCCCAGTGGCCCCTTTTGGGAGAAGGATCCCACCAGCCAGG CCTTATGAAAGTTGCCATCCTGGGCAGGCGTTGGGCGTGGGGTCGGCTGCCCCAGCCCCC TGCTTCCTCACTCAGGGCACCTGCTCCCCCTTCTTCATGAACACCAGCAGATACCTCCAT GTGCCTCCACTCCTGCAGGTGCTGTCACCCCAAGAGGAGTGACCTCAGGCACACCCTGCA GCCCAGGGCCAGCTCGTGGACTCGGAGGAGCCCTTCTGAATGGTCCTCTAGCTCTTCCAG CATCCTCCTGGGGGGGGGTGTGCCCACCCCTTCCTTAGGTTGGTGTATGGAAATGCTCCC ATCCCTCTCTCTTCCCAAGAAAGGAAATAAAAGCCACCTTTGCCCTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAGGGCCACGCTCTGGGTCCGGGCTCCTCGCGCGGGAGACCATGTCCAGCGGCAGCAGC TGCAGCCAGACCCCAAGCCGGGCAATCCCCACCACTCGCCGGGTGGTCCTCGGCGATGGC GTGCAGCTGCCGCCCGGGGACTACAGCACCACTCCCGGCGGCACGCTCTTCAGCACCACC CCAGGAGGTACCAGGATCATCTATGACCGGAAGTTCCTAATGGAGTGTCGGAACTCACCT GTGACCAAAACGCCCCCGAGGGACCTGCCCACCATTCCCGGGGTCACCAGCCCTGTGGGT GATGAGCCCCCCACAGATGCCAGCCAGAACCACCTGCGCAGTAGCCCAGACGACAAGCCG GCGGGGGCGGGCGGTGAAGAGTCACAGTTTGAGATGGACATTTAAAGGACCAGCCATGGG ATCGAGCAATGCCTCTGGGCCCCAGTGGCCCCTTTTGGGAGAAGGATCCCACCAGCCAGG CCTTATGAAAGTTGCCATCCTGGGCAGGCGTTGGGCGTGGGGTCGGCTGCCCCAGCCCCC TGCTTCCTCACTCAGGGCACCTGCTCCCCCTTCTTCATGAACACCAGCAGATACCTCCAT GTGCCTCCACTCCTGCAGGTGCTGTCACCCCAAGAGGAGTGACCTCAGGCACACCCTGCA GCCCAGGGCCAGCTCGTGGACTCGGAGGAGCCCTTCTGAATGGTCCTCTAGCTCTTCCAG CATCCTCCTGGGGGGGGGTGTGCCCACCCCTTCCTTAGGTTGGTGTATGGAAATGCTCCC ATCCCTCTCTCTTCCCAAGAAAGGAAATAAAAGCCACCTTTGCCCTAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 452-608, - strand, RNAz p=0.977863 | |
| 717-828, - strand, RNAz p=0.894612 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 452-608, - strand, RNAz p=0.977863 | |
| 717-828, - strand, RNAz p=0.894612 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 179-365, gnl|bosTau2|chr27 (21146403-21146589) | |
| 179-365, gnl|canFam2|chr16 (30345948-30345816) | |
| 179-365, gnl|canFam2|chr22 (29164261-29164078) | |
| 179-365, gnl|danRer3|chr21 (12033026-12032910) | |
| 179-365, gnl|dasNov1|scaffold_188949 (495-365) | |
| 179-365, gnl|dasNov1|scaffold_188949 (475-302) | |
| 179-365, gnl|echTel1|scaffold_199405 (6034-5903) | |
| 179-365, gnl|echTel1|scaffold_306659 (3727-3537) | |
| 179-365, gnl|fr1|chrUn (2174377-2174246) | |
| 179-365, gnl|hg17|chr7 (5839016-5839183) | |
| 179-365, gnl|hg17|chr8 (38033733-38033865) | |
| 179-365, gnl|Hg17|chr8 (38033747-38033933) | |
| 179-365, gnl|loxAfr1|scaffold_32480 (21731-21878) | |
| 179-365, gnl|loxAfr1|scaffold_32480 (21759-21948) | |
| 179-365, gnl|mm7|chr2 (150674525-150674714) | |
| 179-365, gnl|mm7|chr8 (26028865-26029004) | |
| 179-365, gnl|Mm7|chr8 (26028886-26029072) | |
| 179-365, gnl|monDom2|scaffold_1 (84817032-84816898) | |
| 179-365, gnl|oryCun1|scaffold_133343 (11938-12070) | |
| 179-365, gnl|oryCun1|scaffold_133343 (11960-12140) | |
| 179-365, gnl|panTro1|chr6 (6963461-6963293) | |
| 179-365, gnl|panTro1|chr7 (39413062-39413194) | |
| 179-365, gnl|rheMac2|chr3 (44205683-44205847) | |
| 179-365, gnl|rheMac2|chr8 (38515197-38515329) | |
| 179-365, gnl|rn3|chr16 (69112788-69112649) | |
| 179-365, gnl|rn3|chr16 (69112759-69112579) | |
| 179-365, gnl|tetNig1|chr4 (595542-595664) | |
| 373-828, gnl|bosTau2|chr27 (21148837-21149299) | |
| 373-828, gnl|canFam2|chr16 (30343821-30343480) | |
| 373-828, gnl|canFam2|chr16 (30343816-30343362) | |
| 373-828, gnl|dasNov1|scaffold_5239 (4697-4384) | |
| 373-828, gnl|dasNov1|scaffold_5239 (4692-4268) | |
| 373-828, gnl|echTel1|scaffold_306659 (3535-3207) | |
| 373-828, gnl|echTel1|scaffold_306659 (3530-3095) | |
| 373-828, gnl|hg17|chr14 (20957934-20958402) | |
| 373-828, gnl|hg17|chr22 (22673325-22673662) | |
| 373-828, gnl|Hg17|chr8 (38036578-38037032) | |
| 373-828, gnl|loxAfr1|scaffold_32480 (21950-22308) | |
| 373-828, gnl|loxAfr1|scaffold_32480 (21955-22420) | |
| 373-828, gnl|mm7|chr2 (150674716-150675037) | |
| 373-828, gnl|mm7|chr2 (150674721-150675146) | |
| 373-828, gnl|Mm7|chr8 (26030651-26031088) | |
| 373-828, gnl|monDom2|scaffold_1 (84814639-84814310) | |
| 373-828, gnl|oryCun1|scaffold_133343 (13769-14120) | |
| 373-828, gnl|oryCun1|scaffold_133343 (13770-14212) | |
| 373-828, gnl|panTro1|chr15 (19873812-19874289) | |
| 373-828, gnl|panTro1|chr23_random (6915605-6915267) | |
| 373-828, gnl|rheMac2|chr7 (84148585-84148950) | |
| 373-828, gnl|rheMac2|chr7 (84148590-84149079) | |
| 373-828, gnl|rn3|chr16 (69111181-69110865) | |
| 373-828, gnl|rn3|chr16 (69111180-69110751) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 179-365, gnl|bosTau2|chr27 (21146403-21146589) | |
| 179-365, gnl|canFam2|chr16 (30345948-30345816) | |
| 179-365, gnl|canFam2|chr22 (29164261-29164078) | |
| 179-365, gnl|danRer3|chr21 (12033026-12032910) | |
| 179-365, gnl|dasNov1|scaffold_188949 (495-365) | |
| 179-365, gnl|dasNov1|scaffold_188949 (475-302) | |
| 179-365, gnl|echTel1|scaffold_199405 (6034-5903) | |
| 179-365, gnl|echTel1|scaffold_306659 (3727-3537) | |
| 179-365, gnl|fr1|chrUn (2174377-2174246) | |
| 179-365, gnl|hg17|chr7 (5839016-5839183) | |
| 179-365, gnl|hg17|chr8 (38033733-38033865) | |
| 179-365, gnl|Hg17|chr8 (38033747-38033933) | |
| 179-365, gnl|loxAfr1|scaffold_32480 (21731-21878) | |
| 179-365, gnl|loxAfr1|scaffold_32480 (21759-21948) | |
| 179-365, gnl|mm7|chr2 (150674525-150674714) | |
| 179-365, gnl|mm7|chr8 (26028865-26029004) | |
| 179-365, gnl|Mm7|chr8 (26028886-26029072) | |
| 179-365, gnl|monDom2|scaffold_1 (84817032-84816898) | |
| 179-365, gnl|oryCun1|scaffold_133343 (11938-12070) | |
| 179-365, gnl|oryCun1|scaffold_133343 (11960-12140) | |
| 179-365, gnl|panTro1|chr6 (6963461-6963293) | |
| 179-365, gnl|panTro1|chr7 (39413062-39413194) | |
| 179-365, gnl|rheMac2|chr3 (44205683-44205847) | |
| 179-365, gnl|rheMac2|chr8 (38515197-38515329) | |
| 179-365, gnl|rn3|chr16 (69112788-69112649) | |
| 179-365, gnl|rn3|chr16 (69112759-69112579) | |
| 179-365, gnl|tetNig1|chr4 (595542-595664) | |
| 373-828, gnl|bosTau2|chr27 (21148837-21149299) | |
| 373-828, gnl|canFam2|chr16 (30343821-30343480) | |
| 373-828, gnl|canFam2|chr16 (30343816-30343362) | |
| 373-828, gnl|dasNov1|scaffold_5239 (4697-4384) | |
| 373-828, gnl|dasNov1|scaffold_5239 (4692-4268) | |
| 373-828, gnl|echTel1|scaffold_306659 (3535-3207) | |
| 373-828, gnl|echTel1|scaffold_306659 (3530-3095) | |
| 373-828, gnl|hg17|chr14 (20957934-20958402) | |
| 373-828, gnl|hg17|chr22 (22673325-22673662) | |
| 373-828, gnl|Hg17|chr8 (38036578-38037032) | |
| 373-828, gnl|loxAfr1|scaffold_32480 (21950-22308) | |
| 373-828, gnl|loxAfr1|scaffold_32480 (21955-22420) | |
| 373-828, gnl|mm7|chr2 (150674716-150675037) | |
| 373-828, gnl|mm7|chr2 (150674721-150675146) | |
| 373-828, gnl|Mm7|chr8 (26030651-26031088) | |
| 373-828, gnl|monDom2|scaffold_1 (84814639-84814310) | |
| 373-828, gnl|oryCun1|scaffold_133343 (13769-14120) | |
| 373-828, gnl|oryCun1|scaffold_133343 (13770-14212) | |
| 373-828, gnl|panTro1|chr15 (19873812-19874289) | |
| 373-828, gnl|panTro1|chr23_random (6915605-6915267) | |
| 373-828, gnl|rheMac2|chr7 (84148585-84148950) | |
| 373-828, gnl|rheMac2|chr7 (84148590-84149079) | |
| 373-828, gnl|rn3|chr16 (69111181-69110865) | |
| 373-828, gnl|rn3|chr16 (69111180-69110751) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| nep (0.551775) | |
| csp (0.483559) | |
| mas (0.42061) | |
| ton (0.351) | |
| cga (0.279096) | |
| pla (0.267344) | |
| med (0.232504) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| pty (0.142714) | |
| cov (0.132153) | |
| cly (0.120642) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.551775) | |
| csp (0.483559) | |
| mas (0.42061) | |
| ton (0.351) | |
| cga (0.279096) | |
| pla (0.267344) | |
| med (0.232504) | |
| jej (0.197844) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| pty (0.142714) | |
| cov (0.132153) | |
| cly (0.120642) |