Non-Coding RNA Search

Ss1.1-Pig1-99N12.5

Sequence:


               
               AAGCATCTGGCCAAGCTCATCTCCAAGCGCTGTCCCAGCTGCCAGGCTCCCATTGAGAAG
AACGAGGGGTGTCTGCACATGACTTGTGCCAAATGCAACCATGGATTCTGCTGGCGCTGC
CTCAAGTCCTGGAAGCCAAATCACAAAGACTATTACAACTGCTCCGCCATGGTAAGCAAA
GCAGCTCGCCAGGAGAAGCGGTTCCAGGACTATAATGAGAGGTGTACTTTCCATCACCAG
GCCCGGGAGTTTGCTGTGAACTTGCGGAACCGCGTGTCTGCCATCCACGAGGTGCCCCCA
CCCAAATGCTTCACCTTCCTCAGCGACGCCTGCCGGGGTCTGGAGCAGGCTCGAAAGGTG
CTGGCCTATGCCTGCGTGTACAGCTTCTACAACCAGGACACGGAGCACGTGGACGTGGTG
GAGCAGCAGACGGAGACCCTGGAGCTGCACACCAACGCCCTGCAGATCCTCCTTGAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCATCTGGCCAAGCTCATCTCCAAGCGCTGTCCCAGCTGCCAGGCTCCCATTGAGAAG
AACGAGGGGTGTCTGCACATGACTTGTGCCAAATGCAACCATGGATTCTGCTGGCGCTGC
CTCAAGTCCTGGAAGCCAAATCACAAAGACTATTACAACTGCTCCGCCATGGTAAGCAAA
GCAGCTCGCCAGGAGAAGCGGTTCCAGGACTATAATGAGAGGTGTACTTTCCATCACCAG
GCCCGGGAGTTTGCTGTGAACTTGCGGAACCGCGTGTCTGCCATCCACGAGGTGCCCCCA
CCCAAATGCTTCACCTTCCTCAGCGACGCCTGCCGGGGTCTGGAGCAGGCTCGAAAGGTG
CTGGCCTATGCCTGCGTGTACAGCTTCTACAACCAGGACACGGAGCACGTGGACGTGGTG
GAGCAGCAGACGGAGACCCTGGAGCTGCACACCAACGCCCTGCAGATCCTCCTTGAGGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879529|ref|XP_592192.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879529|ref|XP_592192.1|

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               356-480, gnl|bosTau2|chr23 (13228443-13228567)
               

               
               356-480, gnl|canFam2|chr12 (14716478-14716621)
               

               
               356-480, gnl|danRer3|chr22 (35908148-35908011)
               

               
               356-480, gnl|dasNov1|scaffold_150009 (4077-4214)
               

               
               356-480, gnl|fr1|chrUn (139378226-139378361)
               

               
               356-480, gnl|galGal2|chr3 (4278051-4278190)
               

               
               356-480, gnl|hg17|chr6 (43298489-43298628)
               

               
               356-480, gnl|Hg17|chr6 (43298493-43298617)
               

               
               356-480, gnl|mm7|chr17 (44630985-44630852)
               

               
               356-480, gnl|Mm7|chr17 (44630981-44630857)
               

               
               356-480, gnl|monDom2|scaffold_0 (198413517-198413384)
               

               
               356-480, gnl|panTro1|chr5_random (27883016-27882877)
               

               
               356-480, gnl|rheMac2|chr4 (43113440-43113579)
               

               
               356-480, gnl|rn3|chr9 (9859029-9859162)
               

               
               356-480, gnl|tetNig1|chr17 (7792876-7793010)
               

               
               356-480, gnl|xenTro1|scaffold_1226 (150219-150089)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-480, gnl|bosTau2|chr23 (13228443-13228567)
               

               
               356-480, gnl|canFam2|chr12 (14716478-14716621)
               

               
               356-480, gnl|danRer3|chr22 (35908148-35908011)
               

               
               356-480, gnl|dasNov1|scaffold_150009 (4077-4214)
               

               
               356-480, gnl|fr1|chrUn (139378226-139378361)
               

               
               356-480, gnl|galGal2|chr3 (4278051-4278190)
               

               
               356-480, gnl|hg17|chr6 (43298489-43298628)
               

               
               356-480, gnl|Hg17|chr6 (43298493-43298617)
               

               
               356-480, gnl|mm7|chr17 (44630985-44630852)
               

               
               356-480, gnl|Mm7|chr17 (44630981-44630857)
               

               
               356-480, gnl|monDom2|scaffold_0 (198413517-198413384)
               

               
               356-480, gnl|panTro1|chr5_random (27883016-27882877)
               

               
               356-480, gnl|rheMac2|chr4 (43113440-43113579)
               

               
               356-480, gnl|rn3|chr9 (9859029-9859162)
               

               
               356-480, gnl|tetNig1|chr17 (7792876-7793010)
               

               
               356-480, gnl|xenTro1|scaffold_1226 (150219-150089)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fce (0.271592)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)

	356-480, gnl\|bosTau2\|chr23 (13228443-13228567)
	356-480, gnl\|canFam2\|chr12 (14716478-14716621)
	356-480, gnl\|danRer3\|chr22 (35908148-35908011)
	356-480, gnl\|dasNov1\|scaffold_150009 (4077-4214)
	356-480, gnl\|fr1\|chrUn (139378226-139378361)
	356-480, gnl\|galGal2\|chr3 (4278051-4278190)
	356-480, gnl\|hg17\|chr6 (43298489-43298628)
	356-480, gnl\|Hg17\|chr6 (43298493-43298617)
	356-480, gnl\|mm7\|chr17 (44630985-44630852)
	356-480, gnl\|Mm7\|chr17 (44630981-44630857)
	356-480, gnl\|monDom2\|scaffold_0 (198413517-198413384)
	356-480, gnl\|panTro1\|chr5_random (27883016-27882877)
	356-480, gnl\|rheMac2\|chr4 (43113440-43113579)
	356-480, gnl\|rn3\|chr9 (9859029-9859162)
	356-480, gnl\|tetNig1\|chr17 (7792876-7793010)
	356-480, gnl\|xenTro1\|scaffold_1226 (150219-150089)