Non-Coding RNA Search

Ss1.1-Pig1-9B17.5

Sequence:


               
               TTTGCATCTGAAGTGTGTGTATTGCCTGTTGATGGTGGTTTCCGAGGATCTGTCTGCTGG
TCTGTGGGTCTGTCTGGGCCCAGGCTGGATGGTGGGGGGATTCTGAGGATTCCCTCGGCG
TCTTGCCCTAGAGCTCTTCCACGGATCCCTGAGAGACCTGAAGGCCTCTGAGGCCAAGGA
TGACTTCTTCAATCCCCGGCTGAGCATCTCAGCACAGTTCCTCTCTCGCTTCCAGAAGCC
CTCCAGGTTCTCTCTGCGGGCAAGGCTGAGGAGCCCCTCGAAGCCTGGTCCCCACTGACC
TCCTGCCTCACAGGCCTAGCGCCCTGTGTCTCCTCCTCCTCGGTGCCACCCACAGATAAG
ACGCCTCCGACGCCCACAGCCCTACCCACTCCAGGCCTGGCTCAGGGTGTTCACACCCCT
GCCACCTCCTCCTATGTGGAGGCCACCGCCGGTTCCCGGGCCAAGATGTCACGCAGCATT
TCCCTTGAGGACAGTAAAGGCCCTGTCCTGGCTGAGCTAGCCAGGCCTCCCTGCAGGCCC
TCGTCCTTGGGGGAGCTGTCCTCCCTGGGCCAGGAGCTCCGAGCCATCACCACCACAGTG
ACACCCAGCTCTGACAGTGAGGGCCAAGAACCTGCCCTGCCTTCCCGGGGCAATCATGAG
GCCCGTGCCAGCCTGAAACTCACCCTCTCGAGTATCTGTGACAGGCTCTTACTGCCCCCA
CCCCAGCTAGAACCTTCTGCCATGTGTGTCTGGTCCCAGGAACCTGTGGCCATCCAGCCC
AATGTCATGGTCACAACGGCCAGCTTCTCGGCTCCTAGCCCTGTGAATGTGAGCGCCTCA
AGGCTCCATAACTCCACCTTTCTCCCAAGGTTTCTAGCCCCTGAACCCCTGAATACCTCT
GCCCACCCCAACAGCCCCCCGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCATCTGAAGTGTGTGTATTGCCTGTTGATGGTGGTTTCCGAGGATCTGTCTGCTGG
TCTGTGGGTCTGTCTGGGCCCAGGCTGGATGGTGGGGGGATTCTGAGGATTCCCTCGGCG
TCTTGCCCTAGAGCTCTTCCACGGATCCCTGAGAGACCTGAAGGCCTCTGAGGCCAAGGA
TGACTTCTTCAATCCCCGGCTGAGCATCTCAGCACAGTTCCTCTCTCGCTTCCAGAAGCC
CTCCAGGTTCTCTCTGCGGGCAAGGCTGAGGAGCCCCTCGAAGCCTGGTCCCCACTGACC
TCCTGCCTCACAGGCCTAGCGCCCTGTGTCTCCTCCTCCTCGGTGCCACCCACAGATAAG
ACGCCTCCGACGCCCACAGCCCTACCCACTCCAGGCCTGGCTCAGGGTGTTCACACCCCT
GCCACCTCCTCCTATGTGGAGGCCACCGCCGGTTCCCGGGCCAAGATGTCACGCAGCATT
TCCCTTGAGGACAGTAAAGGCCCTGTCCTGGCTGAGCTAGCCAGGCCTCCCTGCAGGCCC
TCGTCCTTGGGGGAGCTGTCCTCCCTGGGCCAGGAGCTCCGAGCCATCACCACCACAGTG
ACACCCAGCTCTGACAGTGAGGGCCAAGAACCTGCCCTGCCTTCCCGGGGCAATCATGAG
GCCCGTGCCAGCCTGAAACTCACCCTCTCGAGTATCTGTGACAGGCTCTTACTGCCCCCA
CCCCAGCTAGAACCTTCTGCCATGTGTGTCTGGTCCCAGGAACCTGTGGCCATCCAGCCC
AATGTCATGGTCACAACGGCCAGCTTCTCGGCTCCTAGCCCTGTGAATGTGAGCGCCTCA
AGGCTCCATAACTCCACCTTTCTCCCAAGGTTTCTAGCCCCTGAACCCCTGAATACCTCT
GCCCACCCCAACAGCCCCCCGCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UFV9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UFV9_HUMAN

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               95-248, - strand, RNAz p=0.993262
               

               
               351-461, - strand, RNAz p=0.634466
               

               
               804-923, - strand, RNAz p=0.650885

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-248, - strand, RNAz p=0.993262
               

               
               351-461, - strand, RNAz p=0.634466
               

               
               804-923, - strand, RNAz p=0.650885

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               31-122, + strand, RNAmicro p=0.997979
               

               
               874-987, - strand, RNAmicro p=0.9881

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               31-122, + strand, RNAmicro p=0.997979
               

               
               874-987, - strand, RNAmicro p=0.9881

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               19-248, gnl|bosTau2|chr18 (41881638-41881870)
               

               
               19-248, gnl|Hg17|chr19 (41285368-41285595)
               


               
               299-491, gnl|bosTau2|chr18 (41882401-41882593)
               

               
               299-491, gnl|canFam2|chr1 (119504960-119504596)
               

               
               299-491, gnl|dasNov1|scaffold_112772 (2231-1882)
               

               
               299-491, gnl|fr1|chrUn (192900812-192900515)
               

               
               299-491, gnl|hg17|chr19 (41286084-41286448)
               

               
               299-491, gnl|Hg17|chr19 (41286085-41286340)
               

               
               299-491, gnl|loxAfr1|scaffold_232426 (403-766)
               

               
               299-491, gnl|mm7|chr7 (27183388-27183042)
               

               
               299-491, gnl|Mm7|chr7 (27183385-27183193)
               

               
               299-491, gnl|monDom2|scaffold_139 (2097405-2097763)
               

               
               299-491, gnl|oryCun1|scaffold_196669 (8928-8564)
               

               
               299-491, gnl|panTro1|chr20 (38133905-38134269)
               

               
               299-491, gnl|rheMac2|chr19 (42596211-42596575)
               

               
               299-491, gnl|rn3|chr1 (85558844-85559190)
               


               
               544-923, gnl|bosTau2|chr18 (41882583-41882962)
               

               
               544-923, gnl|Hg17|chr19 (41286267-41286664)
               

               
               544-923, gnl|Mm7|chr7 (27183203-27182791)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-248, gnl|bosTau2|chr18 (41881638-41881870)
               

               
               19-248, gnl|Hg17|chr19 (41285368-41285595)
               


               
               299-491, gnl|bosTau2|chr18 (41882401-41882593)
               

               
               299-491, gnl|canFam2|chr1 (119504960-119504596)
               

               
               299-491, gnl|dasNov1|scaffold_112772 (2231-1882)
               

               
               299-491, gnl|fr1|chrUn (192900812-192900515)
               

               
               299-491, gnl|hg17|chr19 (41286084-41286448)
               

               
               299-491, gnl|Hg17|chr19 (41286085-41286340)
               

               
               299-491, gnl|loxAfr1|scaffold_232426 (403-766)
               

               
               299-491, gnl|mm7|chr7 (27183388-27183042)
               

               
               299-491, gnl|Mm7|chr7 (27183385-27183193)
               

               
               299-491, gnl|monDom2|scaffold_139 (2097405-2097763)
               

               
               299-491, gnl|oryCun1|scaffold_196669 (8928-8564)
               

               
               299-491, gnl|panTro1|chr20 (38133905-38134269)
               

               
               299-491, gnl|rheMac2|chr19 (42596211-42596575)
               

               
               299-491, gnl|rn3|chr1 (85558844-85559190)
               


               
               544-923, gnl|bosTau2|chr18 (41882583-41882962)
               

               
               544-923, gnl|Hg17|chr19 (41286267-41286664)
               

               
               544-923, gnl|Mm7|chr7 (27183203-27182791)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               eru (0.120048)

	95-248, - strand, RNAz p=0.993262
	351-461, - strand, RNAz p=0.634466
	804-923, - strand, RNAz p=0.650885

	31-122, + strand, RNAmicro p=0.997979
	874-987, - strand, RNAmicro p=0.9881

	19-248, gnl\|bosTau2\|chr18 (41881638-41881870)
	19-248, gnl\|Hg17\|chr19 (41285368-41285595)

	299-491, gnl\|bosTau2\|chr18 (41882401-41882593)
	299-491, gnl\|canFam2\|chr1 (119504960-119504596)
	299-491, gnl\|dasNov1\|scaffold_112772 (2231-1882)
	299-491, gnl\|fr1\|chrUn (192900812-192900515)
	299-491, gnl\|hg17\|chr19 (41286084-41286448)
	299-491, gnl\|Hg17\|chr19 (41286085-41286340)
	299-491, gnl\|loxAfr1\|scaffold_232426 (403-766)
	299-491, gnl\|mm7\|chr7 (27183388-27183042)
	299-491, gnl\|Mm7\|chr7 (27183385-27183193)
	299-491, gnl\|monDom2\|scaffold_139 (2097405-2097763)
	299-491, gnl\|oryCun1\|scaffold_196669 (8928-8564)
	299-491, gnl\|panTro1\|chr20 (38133905-38134269)
	299-491, gnl\|rheMac2\|chr19 (42596211-42596575)
	299-491, gnl\|rn3\|chr1 (85558844-85559190)

	544-923, gnl\|bosTau2\|chr18 (41882583-41882962)
	544-923, gnl\|Hg17\|chr19 (41286267-41286664)
	544-923, gnl\|Mm7\|chr7 (27183203-27182791)