Non-Coding RNA Search

Ss1.1-Pig1-9M09.5

Sequence:


               
               GGAGTTTGTGTTTGATTAGAGCACAGTAAGTAGACTCAAAATAACTAGAGTTTGAGTCCT
GATTCTGTCCAAACTGTTTCAGCTTCCTGCCCTTGGGTGAGTCCTGTATCAGTTCCTTTG
TTTTGAGGCACAGATAGCAGTACAAGTGTTTTTGGGTTTTTTTTTCTCTCTTTTTCTGGG
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACTCCCAGCAGTACAAGTGTTTTCAACTGTAAGGGGCTGCAGGTGCAT
ATGGTTAGCACCCCAAACTCCTGCACTGTTTAGGGGTCCACTGTACATTTGTTACTGTAG
TAGGAGACCTCCGTTGTACTGGTTCTAAGTAAGGAAGAGAGGAAGGAATGGTCTGAGAAT
GTATGCTGGGTTCAGAGGCACTAAATTGATGTGTTTGATTTCAAGTGTGGAAACCATACC
TAGAAATTATGTATTTCAAATAACCTGTTCTTCAGTATGTAGACACATGTTCATTTTCAC
AAGGGTATTAAACTTTAATCTGCTCATTTTTCAGTTTCAAAGAAACAATTATCTGCTAGT
TTAAACCTTAGGGATTTAACTAATTTGAGAGACAGGATAACATGGCTTAAAACCTGATAA
AATTGGGGAAAGAAAATTTTACAAGACTATACTTTGGTTGGTGTTCACAGTAAGAGTCTT
TGTCTTAAGGTAGCAGTTTAATAACATCATTAAAATGCTTAGTATACTATGTAGTCACAA
TGAAGTGAAGATGGGCAATGTTTAAATGGGCTAAACTTATTTTCCACTGTGTTCCCACAG
CTTTGAAATAGGAATTCCTAACTTGTGGGTCATGGACCGTAAGGAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTTTGTGTTTGATTAGAGCACAGTAAGTAGACTCAAAATAACTAGAGTTTGAGTCCT
GATTCTGTCCAAACTGTTTCAGCTTCCTGCCCTTGGGTGAGTCCTGTATCAGTTCCTTTG
TTTTGAGGCACAGATAGCAGTACAAGTGTTTTTGGGTTTTTTTTTCTCTCTTTTTCTGGG
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
------------ACTCCCAGCAGTACAAGTGTTTTCAACTGTAAGGGGCTGCAGGTGCAT
ATGGTTAGCACCCCAAACTCCTGCACTGTTTAGGGGTCCACTGTACATTTGTTACTGTAG
TAGGAGACCTCCGTTGTACTGGTTCTAAGTAAGGAAGAGAGGAAGGAATGGTCTGAGAAT
GTATGCTGGGTTCAGAGGCACTAAATTGATGTGTTTGATTTCAAGTGTGGAAACCATACC
TAGAAATTATGTATTTCAAATAACCTGTTCTTCAGTATGTAGACACATGTTCATTTTCAC
AAGGGTATTAAACTTTAATCTGCTCATTTTTCAGTTTCAAAGAAACAATTATCTGCTAGT
TTAAACCTTAGGGATTTAACTAATTTGAGAGACAGGATAACATGGCTTAAAACCTGATAA
AATTGGGGAAAGAAAATTTTACAAGACTATACTTTGGTTGGTGTTCACAGTAAGAGTCTT
TGTCTTAAGGTAGCAGTTTAATAACATCATTAAAATGCTTAGTATACTATGTAGTCACAA
TGAAGTGAAGATGGGCAATGTTTAAATGGGCTAAACTTATTTTCCACTGTGTTCCCACAG
CTTTGAAATAGGAATTCCTAACTTGTGGGTCATGGACCGTAAGGAAAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               18-152, gnl|bosTau2|chr11 (29824764-29824899)
               


               
               505-814, gnl|bosTau2|chr11 (29825204-29825494)
               

               
               505-814, gnl|Mm7|chr11 (23813682-23813304)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-152, gnl|bosTau2|chr11 (29824764-29824899)
               


               
               505-814, gnl|bosTau2|chr11 (29825204-29825494)
               

               
               505-814, gnl|Mm7|chr11 (23813682-23813304)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               eye (0.170503)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	18-152, gnl\|bosTau2\|chr11 (29824764-29824899)

	505-814, gnl\|bosTau2\|chr11 (29825204-29825494)
	505-814, gnl\|Mm7\|chr11 (23813682-23813304)