Non-Coding RNA Search

Ss1.1-Pig2-100B14.5

Sequence:


               
               AGCGAAAGTCCGCAGCAGGGCTCTGGGCAGCAGCGCGAAAACGAGCGCCAGGACCAGGAC
CAGGAGCTGAGGCCGGAGGATGTCCCGGTCTATGGCAGGACCCACAGGGGCCGCTACCAC
TACAGACACAGGAGCCACACGCGGCGGCGGCGCCGCTCCTGCCGGAGGCGCAGGAGACGC
GCCTGCCGGCACAGGCGGCACCGCAGAGGCTGCAGACGGATCAGGAGGAGGAGAAGATGC
AGAAGGAGGCTCTAAGCCTCCCTGGGCCCATCACACCCCTGGTTGGAAATGAAGGAAAAG
AAAAAGTCACCTGCCAGGAACCACCTCTCGAGACCATAGCAATCCCCCATGGATGCCCAG
GCCCTGTGTTTGCAAGGAGCCCACGAGATCTTGAGTAAAATGAGCAAAAGTCATCTGCCA
ATAAAGCTTGAGATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAGGACTCTTT
CAACTCAGAGGCTGTCCTCAAATATCTGTGCGTTTTGATAGTGGTTCATAGTTACGATTG
AGGGGCCGAGAGCTCTGAGTCCTCAGGTAGAGCCGTTGTCTCTGAGCTCCACTTTGGGGT
GATCTGAGATGAGATCATTCCCCTTGGGCCAGTCCAGTTCTCCAGAGAGACTCTTCTGAT
CACCTGCCTGGAAGGCAAGATCCCTTTGTTAAGCAAAGAAAAACTACCTGTGGTCGGAAT
TGGGAAGCATCTGTGCGGTGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGAAAGTCCGCAGCAGGGCTCTGGGCAGCAGCGCGAAAACGAGCGCCAGGACCAGGAC
CAGGAGCTGAGGCCGGAGGATGTCCCGGTCTATGGCAGGACCCACAGGGGCCGCTACCAC
TACAGACACAGGAGCCACACGCGGCGGCGGCGCCGCTCCTGCCGGAGGCGCAGGAGACGC
GCCTGCCGGCACAGGCGGCACCGCAGAGGCTGCAGACGGATCAGGAGGAGGAGAAGATGC
AGAAGGAGGCTCTAAGCCTCCCTGGGCCCATCACACCCCTGGTTGGAAATGAAGGAAAAG
AAAAAGTCACCTGCCAGGAACCACCTCTCGAGACCATAGCAATCCCCCATGGATGCCCAG
GCCCTGTGTTTGCAAGGAGCCCACGAGATCTTGAGTAAAATGAGCAAAAGTCATCTGCCA
ATAAAGCTTGAGATGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGAGGACTCTTT
CAACTCAGAGGCTGTCCTCAAATATCTGTGCGTTTTGATAGTGGTTCATAGTTACGATTG
AGGGGCCGAGAGCTCTGAGTCCTCAGGTAGAGCCGTTGTCTCTGAGCTCCACTTTGGGGT
GATCTGAGATGAGATCATTCCCCTTGGGCCAGTCCAGTTCTCCAGAGAGACTCTTCTGAT
CACCTGCCTGGAAGGCAAGATCCCTTTGTTAAGCAAAGAAAAACTACCTGTGGTCGGAAT
TGGGAAGCATCTGTGCGGTGTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               HSP2_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               HSP2_PIG

Aligned organism(s): 10 entry(ies)

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Aligned organism(s): 10 entry(ies)

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               12-209, gnl|bosTau2|chr25 (10226611-10226802)
               

               
               12-209, gnl|canFam2|chr6 (34535843-34535306)
               

               
               12-209, gnl|echTel1|scaffold_197082 (384-990)
               

               
               12-209, gnl|hg17|chr16 (11276996-11277695)
               

               
               12-209, gnl|Hg17|chr16 (11277685-11277457)
               

               
               12-209, gnl|mm7|chr16 (10469062-10469651)
               

               
               12-209, gnl|Mm7|chr16 (10469646-10469425)
               

               
               12-209, gnl|panTro1|chr18 (11608770-11609469)
               

               
               12-209, gnl|rheMac2|chr20 (11350069-11350769)
               

               
               12-209, gnl|rn3|chr10 (4814319-4813727)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-209, gnl|bosTau2|chr25 (10226611-10226802)
               

               
               12-209, gnl|canFam2|chr6 (34535843-34535306)
               

               
               12-209, gnl|echTel1|scaffold_197082 (384-990)
               

               
               12-209, gnl|hg17|chr16 (11276996-11277695)
               

               
               12-209, gnl|Hg17|chr16 (11277685-11277457)
               

               
               12-209, gnl|mm7|chr16 (10469062-10469651)
               

               
               12-209, gnl|Mm7|chr16 (10469646-10469425)
               

               
               12-209, gnl|panTro1|chr18 (11608770-11609469)
               

               
               12-209, gnl|rheMac2|chr20 (11350069-11350769)
               

               
               12-209, gnl|rn3|chr10 (4814319-4813727)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	12-209, gnl\|bosTau2\|chr25 (10226611-10226802)
	12-209, gnl\|canFam2\|chr6 (34535843-34535306)
	12-209, gnl\|echTel1\|scaffold_197082 (384-990)
	12-209, gnl\|hg17\|chr16 (11276996-11277695)
	12-209, gnl\|Hg17\|chr16 (11277685-11277457)
	12-209, gnl\|mm7\|chr16 (10469062-10469651)
	12-209, gnl\|Mm7\|chr16 (10469646-10469425)
	12-209, gnl\|panTro1\|chr18 (11608770-11609469)
	12-209, gnl\|rheMac2\|chr20 (11350069-11350769)
	12-209, gnl\|rn3\|chr10 (4814319-4813727)