Non-Coding RNA Search

Ss1.1-Pig2-100C17.5

Sequence:


               
               GGGACATCGTGTGCAGCAGCGAGGAGCCCGCAGAGGAACATGGCACTGCTCTCGGGGCTC
CTGGTGCTCAGCTTGTTCTGCCTGCACGTGCTCCCTCCTGTGAGCGCCATGGACCCCTTG
GGCCTGCAGCTGATGATCGGGCAGGGCCAGGAGAAGCTGTCCCCTCTTTCCCTCCTCGAG
TTGGACAACCAGGAGCATGGTGGCCACACTGCCCTGAACGAGGCCCCAGGAGAATGCAAG
GGGACCCCAACCCCGGAGCAGACCCGCAGGTTGGCCCAGGCCATGATGGCCTTCACCAGG
GACCTCTTCTCCCTGGTGGCCCGAAGCTCCACCAGGCCCAACCTCGTCCTGTCGCCTCTG
AGTGTGGCCCTGGCACTGTCTCACCTGGCACTAGGTGCTCAGAACCAAACGCTGCAGAGG
CTGCAGCAGGTGCTGCATGCAGACTCAGGGCCCTGCCTCCCCTACCTGCTCAGCCGCCTC
TGCCAGGATCTGGGCCCTGGGGCTTTCCGACTGGCTGCCAGAATGTACCTGCAGAAAGGA
TTTCCCATCAAAGAAGACTTCCTGGAACAATCAGAAGAGCTCTTTGGTGCAAAGCCCATG
AGCCTGACCGGAAGGAAGGGGGATGACCTGGCGAACATCAACCAGTGGGTGAAGGAGGCC
ACGGAGGGCAAGATTGAGGATTTCCTCTCAGACCTGCCGGAGGACACAGTGCTGCTTCTC
CTCAATGCCATCCATTTCCAGGGCTTCTGGAGGAGCAAGTTCGACCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACATCGTGTGCAGCAGCGAGGAGCCCGCAGAGGAACATGGCACTGCTCTCGGGGCTC
CTGGTGCTCAGCTTGTTCTGCCTGCACGTGCTCCCTCCTGTGAGCGCCATGGACCCCTTG
GGCCTGCAGCTGATGATCGGGCAGGGCCAGGAGAAGCTGTCCCCTCTTTCCCTCCTCGAG
TTGGACAACCAGGAGCATGGTGGCCACACTGCCCTGAACGAGGCCCCAGGAGAATGCAAG
GGGACCCCAACCCCGGAGCAGACCCGCAGGTTGGCCCAGGCCATGATGGCCTTCACCAGG
GACCTCTTCTCCCTGGTGGCCCGAAGCTCCACCAGGCCCAACCTCGTCCTGTCGCCTCTG
AGTGTGGCCCTGGCACTGTCTCACCTGGCACTAGGTGCTCAGAACCAAACGCTGCAGAGG
CTGCAGCAGGTGCTGCATGCAGACTCAGGGCCCTGCCTCCCCTACCTGCTCAGCCGCCTC
TGCCAGGATCTGGGCCCTGGGGCTTTCCGACTGGCTGCCAGAATGTACCTGCAGAAAGGA
TTTCCCATCAAAGAAGACTTCCTGGAACAATCAGAAGAGCTCTTTGGTGCAAAGCCCATG
AGCCTGACCGGAAGGAAGGGGGATGACCTGGCGAACATCAACCAGTGGGTGAAGGAGGCC
ACGGAGGGCAAGATTGAGGATTTCCTCTCAGACCTGCCGGAGGACACAGTGCTGCTTCTC
CTCAATGCCATCCATTTCCAGGGCTTCTGGAGGAGCAAGTTCGACCCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5ND35_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5ND35_MOUSE

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               191-399, gnl|bosTau2|chr19 (17371516-17371724)
               

               
               191-399, gnl|Hg17|chr17 (1595750-1595958)
               

               
               191-399, gnl|Mm7|chr11 (75519131-75518923)
               


               
               537-743, gnl|bosTau2|chr19 (17372616-17372822)
               

               
               537-743, gnl|Hg17|chr17 (1597351-1597557)
               

               
               537-743, gnl|Mm7|chr11 (75518164-75517958)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               191-399, gnl|bosTau2|chr19 (17371516-17371724)
               

               
               191-399, gnl|Hg17|chr17 (1595750-1595958)
               

               
               191-399, gnl|Mm7|chr11 (75519131-75518923)
               


               
               537-743, gnl|bosTau2|chr19 (17372616-17372822)
               

               
               537-743, gnl|Hg17|chr17 (1597351-1597557)
               

               
               537-743, gnl|Mm7|chr11 (75518164-75517958)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eje (0.0988338)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eje (0.0988338)

	191-399, gnl\|bosTau2\|chr19 (17371516-17371724)
	191-399, gnl\|Hg17\|chr17 (1595750-1595958)
	191-399, gnl\|Mm7\|chr11 (75519131-75518923)

	537-743, gnl\|bosTau2\|chr19 (17372616-17372822)
	537-743, gnl\|Hg17\|chr17 (1597351-1597557)
	537-743, gnl\|Mm7\|chr11 (75518164-75517958)