Non-Coding RNA Search

Ss1.1-Pig2-101K09.5

Sequence:


               
               TGGGCAAGCCTCCTCCGCAACACTACAGCCGCCTTCTCTGGGCCCCACAGCAGGCCTGCC
CACTTCACTTTCAGGTTTTGCTTCACTTTCAGGTTTCAGTGTCTTCCTGTGCCTGTCTGC
GTCCCCATCCTTCCAGGTTTCCATCTTCCTGTTTCCCCTCCTGGGCTGGTGGCAGTAGGG
GGCTGCGCCCAGTGGGCCCTGTGGAGATGCTCAGTGCTTGGGATCGCCGGGACCGGCCCC
GTGAAGAGGTGGCAGCTGCAGGGCTCCAGGGCTTCGCCGTGGACAAGACCTTCCTGTCCT
CCCTCAAAGGCATCCTGCTGGAAACTGAGCTGGTCCTGACCTTCATCATCTTCATCTGCT
TCACGGCCTCCATCTCCGCCTACATGGCTGCCGCGCTGCTGGAGTTCTTCATCACGCTCG
CCTTCCTCTTCCTCTATGCCACCCAGTACTACCAGCGCTTTGACCGGCTGAACTGGCCCT
GTCTGGACTTCCTCCGCTGTGTCAGCGCCATCATCATCTTCTTGGTGGTTTCCTTTGCGG
CTGTGACCTCCCGGGAAGGAGCTGCCATTGCTGCTTTCGTGTTTGGCATCATCTTGGTTT
CTGTCTTTGCCTATGATGCCTTTAAGATCTACCAGACTGAGATGGCACCCAGGGCCACCC
AAGGGGACCAGCAGTGACCCTGGGCTACCTGGCTCCCAGGTCCAGCCAGAAAAGGGGGAC
AGCACAGCCCAGAGACATCTCCTTTGGATTCACTCACTTTGTAGCCTACGATCCCCTACC
CCAGGCCTACAGAAATGGAGCCAGGCCTGAGAAGTCACCGGGGACTTGTCTGTGGGACCT
GGTGCTCTGAGATCTGGCTCCTGATGAGGCTTAGCTGGGGAGGGGGTTTTAGGGACAAAG
GGGAAGGTGCAGGAGGAAGCAAATCGTTCCCAAATTAAAAGCTTCGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCAAGCCTCCTCCGCAACACTACAGCCGCCTTCTCTGGGCCCCACAGCAGGCCTGCC
CACTTCACTTTCAGGTTTTGCTTCACTTTCAGGTTTCAGTGTCTTCCTGTGCCTGTCTGC
GTCCCCATCCTTCCAGGTTTCCATCTTCCTGTTTCCCCTCCTGGGCTGGTGGCAGTAGGG
GGCTGCGCCCAGTGGGCCCTGTGGAGATGCTCAGTGCTTGGGATCGCCGGGACCGGCCCC
GTGAAGAGGTGGCAGCTGCAGGGCTCCAGGGCTTCGCCGTGGACAAGACCTTCCTGTCCT
CCCTCAAAGGCATCCTGCTGGAAACTGAGCTGGTCCTGACCTTCATCATCTTCATCTGCT
TCACGGCCTCCATCTCCGCCTACATGGCTGCCGCGCTGCTGGAGTTCTTCATCACGCTCG
CCTTCCTCTTCCTCTATGCCACCCAGTACTACCAGCGCTTTGACCGGCTGAACTGGCCCT
GTCTGGACTTCCTCCGCTGTGTCAGCGCCATCATCATCTTCTTGGTGGTTTCCTTTGCGG
CTGTGACCTCCCGGGAAGGAGCTGCCATTGCTGCTTTCGTGTTTGGCATCATCTTGGTTT
CTGTCTTTGCCTATGATGCCTTTAAGATCTACCAGACTGAGATGGCACCCAGGGCCACCC
AAGGGGACCAGCAGTGACCCTGGGCTACCTGGCTCCCAGGTCCAGCCAGAAAAGGGGGAC
AGCACAGCCCAGAGACATCTCCTTTGGATTCACTCACTTTGTAGCCTACGATCCCCTACC
CCAGGCCTACAGAAATGGAGCCAGGCCTGAGAAGTCACCGGGGACTTGTCTGTGGGACCT
GGTGCTCTGAGATCTGGCTCCTGATGAGGCTTAGCTGGGGAGGGGGTTTTAGGGACAAAG
GGGAAGGTGCAGGAGGAAGCAAATCGTTCCCAAATTAAAAGCTTCGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               CKLF5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               CKLF5_MOUSE

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               4-334, gnl|bosTau2|chr10 (13749926-13749608)
               

               
               4-334, gnl|Hg17|chr14 (22916130-22916428)
               


               
               662-944, gnl|bosTau2|chr10 (13747590-13747317)
               

               
               662-944, gnl|Hg17|chr14 (22918521-22918812)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-334, gnl|bosTau2|chr10 (13749926-13749608)
               

               
               4-334, gnl|Hg17|chr14 (22916130-22916428)
               


               
               662-944, gnl|bosTau2|chr10 (13747590-13747317)
               

               
               662-944, gnl|Hg17|chr14 (22918521-22918812)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.42851)
               

               
               fce (0.271592)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.42851)
               

               
               fce (0.271592)

	4-334, gnl\|bosTau2\|chr10 (13749926-13749608)
	4-334, gnl\|Hg17\|chr14 (22916130-22916428)

	662-944, gnl\|bosTau2\|chr10 (13747590-13747317)
	662-944, gnl\|Hg17\|chr14 (22918521-22918812)