Ss1.1-Pig2-101O02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCCCACGATGGCCAGGCCGCAGAGGACTCCGGCACCTCCTCCTCCCCCGACCTCCTAC CCCCGCCTCCAGTTTGATGCCGAGTTCCGACGCTTCGCGCTACCTCGCGCTTCGGTGAGC GGCTTCCAAGAGTTCTCTCGGTTGCTGCGTGCGGTACACCAGATCCCGGGCCTGGACGTG CTGCTTGGCTATACGGATGCTCACGGCGACCTACTGCCCCTCACCAACGACGACAGCCTG CACCGGGCCCTGGCCAGTGGGCCCCCGCCACTGAGACTGCTAGTGCAGAAGCGGGAAGCT GACTCCAGTGGCCTGGCCTTTGCCTCCAACTCCCTGCAGCGGCGCAAGAAAGGGCTCCTA CTCCGGCCAGTGGCACCTCTGCGCACCCGGCCACCCCTGCTAATCAGCCTGCCCCAAGAT TTCCGACAGGTTTCTTCAGTCATTGATGTGGACTTACTGCCTGAGACCCACCGACGGGTG CGGCTGCACAAGCATGGTTCTGACCGCCCCCTGGGTTTCTACATCCGAGATGGCATGAGC GTGCGCGTAGCTCCCCAGGGCCTGGAACGAGTTCCAGGCATCTTCATCTCCCGCCTGGTA CGAGGGGGCCTGGCTGAGAGTACAGGGCTGCTGGCGGTTAGTGATGAGATCCTCGAGGTC AATGGCATTGAGGTAGCTGGAAAGACCTTGGACCAAGTGACGGACATGATGGTCGCCAAC AGTCACAACCTCATTGTCACTGTCAAGCCAGCCAATCAGCGCAATAATGTGGTTCGTGGG ACATCTGGGCGTCTGATGAGGCCTCCTTCTGCTGGGCCTGGTGAGCCTGATAGTGACGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCCCACGATGGCCAGGCCGCAGAGGACTCCGGCACCTCCTCCTCCCCCGACCTCCTAC CCCCGCCTCCAGTTTGATGCCGAGTTCCGACGCTTCGCGCTACCTCGCGCTTCGGTGAGC GGCTTCCAAGAGTTCTCTCGGTTGCTGCGTGCGGTACACCAGATCCCGGGCCTGGACGTG CTGCTTGGCTATACGGATGCTCACGGCGACCTACTGCCCCTCACCAACGACGACAGCCTG CACCGGGCCCTGGCCAGTGGGCCCCCGCCACTGAGACTGCTAGTGCAGAAGCGGGAAGCT GACTCCAGTGGCCTGGCCTTTGCCTCCAACTCCCTGCAGCGGCGCAAGAAAGGGCTCCTA CTCCGGCCAGTGGCACCTCTGCGCACCCGGCCACCCCTGCTAATCAGCCTGCCCCAAGAT TTCCGACAGGTTTCTTCAGTCATTGATGTGGACTTACTGCCTGAGACCCACCGACGGGTG CGGCTGCACAAGCATGGTTCTGACCGCCCCCTGGGTTTCTACATCCGAGATGGCATGAGC GTGCGCGTAGCTCCCCAGGGCCTGGAACGAGTTCCAGGCATCTTCATCTCCCGCCTGGTA CGAGGGGGCCTGGCTGAGAGTACAGGGCTGCTGGCGGTTAGTGATGAGATCCTCGAGGTC AATGGCATTGAGGTAGCTGGAAAGACCTTGGACCAAGTGACGGACATGATGGTCGCCAAC AGTCACAACCTCATTGTCACTGTCAAGCCAGCCAATCAGCGCAATAATGTGGTTCGTGGG ACATCTGGGCGTCTGATGAGGCCTCCTTCTGCTGGGCCTGGTGAGCCTGATAGTGACGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 295-413, - strand, RNAz p=0.876102 | |
| 614-840, + strand, RNAz p=0.984388 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 295-413, - strand, RNAz p=0.876102 | |
| 614-840, + strand, RNAz p=0.984388 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 295-840, gnl|bosTau2|chr18 (15148844-15148299) | |
| 295-840, gnl|Hg17|chr16 (66253299-66253850) | |
| 295-840, gnl|Mm7|chr8 (104301397-104301948) | |
| 390-776, gnl|bosTau2|chr13 (59954053-59953667) | |
| 390-776, gnl|canFam2|chr24 (40101381-40102050) | |
| 390-776, gnl|danRer3|chr5 (40932054-40932769) | |
| 390-776, gnl|dasNov1|scaffold_8981 (3986-3320) | |
| 390-776, gnl|echTel1|scaffold_307690 (7437-6763) | |
| 390-776, gnl|fr1|chrUn (118505986-118506666) | |
| 390-776, gnl|galGal2|chr20 (13078185-13077521) | |
| 390-776, gnl|hg17|chr20 (48799558-48800225) | |
| 390-776, gnl|Hg17|chr20 (48799697-48800083) | |
| 390-776, gnl|loxAfr1|scaffold_5899 (36944-36284) | |
| 390-776, gnl|mm7|chr2 (167890986-167891660) | |
| 390-776, gnl|Mm7|chr2 (167891132-167891518) | |
| 390-776, gnl|monDom2|scaffold_1 (162657194-162657882) | |
| 390-776, gnl|oryCun1|scaffold_87943 (1865-1201) | |
| 390-776, gnl|panTro1|chr21 (51535972-51536639) | |
| 390-776, gnl|rheMac2|chr10 (13709581-13708914) | |
| 390-776, gnl|rn3|chr3 (159154973-159155645) | |
| 390-776, gnl|tetNig1|chr21 (1589159-1589855) | |
| 390-776, gnl|xenTro1|scaffold_165 (1303285-1303955) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 295-840, gnl|bosTau2|chr18 (15148844-15148299) | |
| 295-840, gnl|Hg17|chr16 (66253299-66253850) | |
| 295-840, gnl|Mm7|chr8 (104301397-104301948) | |
| 390-776, gnl|bosTau2|chr13 (59954053-59953667) | |
| 390-776, gnl|canFam2|chr24 (40101381-40102050) | |
| 390-776, gnl|danRer3|chr5 (40932054-40932769) | |
| 390-776, gnl|dasNov1|scaffold_8981 (3986-3320) | |
| 390-776, gnl|echTel1|scaffold_307690 (7437-6763) | |
| 390-776, gnl|fr1|chrUn (118505986-118506666) | |
| 390-776, gnl|galGal2|chr20 (13078185-13077521) | |
| 390-776, gnl|hg17|chr20 (48799558-48800225) | |
| 390-776, gnl|Hg17|chr20 (48799697-48800083) | |
| 390-776, gnl|loxAfr1|scaffold_5899 (36944-36284) | |
| 390-776, gnl|mm7|chr2 (167890986-167891660) | |
| 390-776, gnl|Mm7|chr2 (167891132-167891518) | |
| 390-776, gnl|monDom2|scaffold_1 (162657194-162657882) | |
| 390-776, gnl|oryCun1|scaffold_87943 (1865-1201) | |
| 390-776, gnl|panTro1|chr21 (51535972-51536639) | |
| 390-776, gnl|rheMac2|chr10 (13709581-13708914) | |
| 390-776, gnl|rn3|chr3 (159154973-159155645) | |
| 390-776, gnl|tetNig1|chr21 (1589159-1589855) | |
| 390-776, gnl|xenTro1|scaffold_165 (1303285-1303955) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.116252) | |
| nbm (0.0993246) |