Ss1.1-Pig2-101P02.5
|
CATGCTAGAAGCAGGAAGGAATGTGGCTCCCCTGGAGCTTTGCAGACTCCTTTTTGGTCT
TGTATGATGTTCCTTAGCCCAAAGACAGCCACCCAGGGCTGAAATCAGCCACTTCTTACG
GCTTTTCCTGCCACCCTGAGCCCTAGACCCATGGGTGGCTGAATCCTCTGGACTGTGAAG
ACTATAATTTATTGCTGTAATTTATTTGAGACTAGGTGGCTGGTGGGCAGTGCTGGGGTC
AGGGTAGGGCAGAGACCCCTGTGAGTCCCTGGCGTCCCTTCGCCAGGGCTTTGGTTAGAC
AAGCCTTCTGTCTAATGTGGCAGCTGCCCGGCTCCGGATGGCCGAGCAAGCAGGGGCTGG
CCCGGGACAGCATCTGGGCAGGAGGAGGGGCGGGGCTGACCAACCGTGACCAAAATCCTC
TTCTGCCCCACGCAGCCCCTTTCTTTCCTGTCCTCTGCTCCCTTCTGCTCCCCTCCCCAA
AGGCCGCAGCCTTTATTCTGAGCCCATCAACGTAGGAGAGGAAAGCAAGAGGCCCAGAGA
GGGCAGGGGCTGCCTCGGGGCCCACAGCCCCGACCACTCTCAGGGCTTTATGGGCACTGC
AGTCCAGCCTGGTCCACCTGCCTGCACCTTAAGGCCAGTAGGCCAGGGGTGAGAGGTGGC
TCCTTATGGCTTTCATGCCCTTTGTTTGCTGATGTTAAATTTTGCATCATAATTTCTATA
TTGTCCCTGAGTATTAGAGCTATAATTTATTCATTTTTCTCTGTGTCTGTGCCAAGAAGC
CCAGGCTCTGGGCCTGCCCTCTTGCCTGGGAGGCCTTGCCAGCCTGTGAGCTTGTGGGAA
CACCTTGTACCTGAGCTTACAGGTATGAATAAAGAGGCTCTATTTTTAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATGCTAGAAGCAGGAAGGAATGTGGCTCCCCTGGAGCTTTGCAGACTCCTTTTTGGTCT
TGTATGATGTTCCTTAGCCCAAAGACAGCCACCCAGGGCTGAAATCAGCCACTTCTTACG
GCTTTTCCTGCCACCCTGAGCCCTAGACCCATGGGTGGCTGAATCCTCTGGACTGTGAAG
ACTATAATTTATTGCTGTAATTTATTTGAGACTAGGTGGCTGGTGGGCAGTGCTGGGGTC
AGGGTAGGGCAGAGACCCCTGTGAGTCCCTGGCGTCCCTTCGCCAGGGCTTTGGTTAGAC
AAGCCTTCTGTCTAATGTGGCAGCTGCCCGGCTCCGGATGGCCGAGCAAGCAGGGGCTGG
CCCGGGACAGCATCTGGGCAGGAGGAGGGGCGGGGCTGACCAACCGTGACCAAAATCCTC
TTCTGCCCCACGCAGCCCCTTTCTTTCCTGTCCTCTGCTCCCTTCTGCTCCCCTCCCCAA
AGGCCGCAGCCTTTATTCTGAGCCCATCAACGTAGGAGAGGAAAGCAAGAGGCCCAGAGA
GGGCAGGGGCTGCCTCGGGGCCCACAGCCCCGACCACTCTCAGGGCTTTATGGGCACTGC
AGTCCAGCCTGGTCCACCTGCCTGCACCTTAAGGCCAGTAGGCCAGGGGTGAGAGGTGGC
TCCTTATGGCTTTCATGCCCTTTGTTTGCTGATGTTAAATTTTGCATCATAATTTCTATA
TTGTCCCTGAGTATTAGAGCTATAATTTATTCATTTTTCTCTGTGTCTGTGCCAAGAAGC
CCAGGCTCTGGGCCTGCCCTCTTGCCTGGGAGGCCTTGCCAGCCTGTGAGCTTGTGGGAA
CACCTTGTACCTGAGCTTACAGGTATGAATAAAGAGGCTCTATTTTTAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
697-887, DB809245 full-length enriched swine cDNA library, adult liver Sus
(dbj|DB809245.1|), blast E-value=0, identity=94.76% |
|
655-889, CR978206 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016A0436 5',
(emb|CR978206.1|), blast E-value=0, identity=90.68% |
|
422-631, AR062F07IPBCBF07R Infected Porcine Peripheral Blood Cell cDNA
(gb|BI304581.1|), blast E-value=0, identity=98.1% |
|
478-886, 707086 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB452234.1|),
blast E-value=0, identity=88.01% |
|
578-886, LeukoS4_6_G10.b1_A026 Stimulated peripheral blood leukocytes S4
(gb|CD470622.1|), blast E-value=0, identity=90.61% |
|
478-887, HW_LOIN_45_E05 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV793638.1|), blast E-value=0, identity=88.04% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
697-887, DB809245 full-length enriched swine cDNA library, adult liver Sus
(dbj|DB809245.1|), blast E-value=0, identity=94.76% |
|
655-889, CR978206 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016A0436 5',
(emb|CR978206.1|), blast E-value=0, identity=90.68% |
|
422-631, AR062F07IPBCBF07R Infected Porcine Peripheral Blood Cell cDNA
(gb|BI304581.1|), blast E-value=0, identity=98.1% |
|
478-886, 707086 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB452234.1|),
blast E-value=0, identity=88.01% |
|
578-886, LeukoS4_6_G10.b1_A026 Stimulated peripheral blood leukocytes S4
(gb|CD470622.1|), blast E-value=0, identity=90.61% |
|
478-887, HW_LOIN_45_E05 Bos taurus CF-24-HW loin cDNA library Bos taurus
(gb|DV793638.1|), blast E-value=0, identity=88.04% |
|
1-284, gnl|bosTau2|chr22 (9888506-9888217) |
|
1-284, gnl|canFam2|chr23 (11826471-11826921) |
|
1-284, gnl|hg17|chr3 (39158949-39159377) |
|
1-284, gnl|Hg17|chr3 (39159285-39159000) |
|
1-284, gnl|loxAfr1|scaffold_63024 (10378-9961) |
|
1-284, gnl|mm7|chr9 (119667582-119667959) |
|
1-284, gnl|Mm7|chr9 (119667869-119667630) |
|
1-284, gnl|oryCun1|scaffold_133767 (1341-1714) |
|
1-284, gnl|panTro1|chr2 (40269770-40270198) |
|
1-284, gnl|rheMac2|chr2 (97378136-97377709) |
|
1-284, gnl|rn3|chr8 (124953697-124954047) |
| |
|
304-889, gnl|bosTau2|chr22 (9888156-9887573) |
|
304-889, gnl|Hg17|chr3 (39158941-39158349) |
|
304-889, gnl|Mm7|chr9 (119667575-119667059) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-284, gnl|bosTau2|chr22 (9888506-9888217) |
|
1-284, gnl|canFam2|chr23 (11826471-11826921) |
|
1-284, gnl|hg17|chr3 (39158949-39159377) |
|
1-284, gnl|Hg17|chr3 (39159285-39159000) |
|
1-284, gnl|loxAfr1|scaffold_63024 (10378-9961) |
|
1-284, gnl|mm7|chr9 (119667582-119667959) |
|
1-284, gnl|Mm7|chr9 (119667869-119667630) |
|
1-284, gnl|oryCun1|scaffold_133767 (1341-1714) |
|
1-284, gnl|panTro1|chr2 (40269770-40270198) |
|
1-284, gnl|rheMac2|chr2 (97378136-97377709) |
|
1-284, gnl|rn3|chr8 (124953697-124954047) |
| |
|
304-889, gnl|bosTau2|chr22 (9888156-9887573) |
|
304-889, gnl|Hg17|chr3 (39158941-39158349) |
|
304-889, gnl|Mm7|chr9 (119667575-119667059) |
|
col (0.195008) |
|
duo (0.172801) |
|
eep (0.122564) |
|
med (0.116252) |
|
col (0.195008) |
|
duo (0.172801) |
|
eep (0.122564) |
|
med (0.116252) |
