Non-Coding RNA Search

Ss1.1-Pig2-102G15.5

Sequence:


               
               GACGCTGCCCAGCCCCCATGAGCTGGGACCTCAGTTGCAGGCAGGCAGAGAAAACCTGTG
GAAGAGGTTACCTTTAACACAGCAACAGAAGCACGCATCTCATCTCTTTGCATTTTCTGT
TTTTTAATGTGGCCCTGAGTGAGGCAGTGGGCAACACTGCAGCCTCTGTTTGCACCCCAC
CTGGCCAGCTTTTCCATCGTGGTGCCAGAAGCTTCTCAGCTATAGCAAGCTGCTGGCATC
AGTCAGGCCAACTGGCCAGCAGTTTGACCCACACTCCATGGGCATCCACACATTTGTATC
TCGTTTCAGTTAAAACCCAGTTTTTAAAGAAATGCTGCAAAATTTAAGTTTTCTAGAGTT
TATTTTATCCCCCTTTTCCATCTCACCACCAGATGAGTAACTTTACTTTGTTCCTCCCTC
TTCGTTTTCCCCTTCCTGCACAAATCTAGAAAAGTTCACCTTCCTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACGCTGCCCAGCCCCCATGAGCTGGGACCTCAGTTGCAGGCAGGCAGAGAAAACCTGTG
GAAGAGGTTACCTTTAACACAGCAACAGAAGCACGCATCTCATCTCTTTGCATTTTCTGT
TTTTTAATGTGGCCCTGAGTGAGGCAGTGGGCAACACTGCAGCCTCTGTTTGCACCCCAC
CTGGCCAGCTTTTCCATCGTGGTGCCAGAAGCTTCTCAGCTATAGCAAGCTGCTGGCATC
AGTCAGGCCAACTGGCCAGCAGTTTGACCCACACTCCATGGGCATCCACACATTTGTATC
TCGTTTCAGTTAAAACCCAGTTTTTAAAGAAATGCTGCAAAATTTAAGTTTTCTAGAGTT
TATTTTATCCCCCTTTTCCATCTCACCACCAGATGAGTAACTTTACTTTGTTCCTCCCTC
TTCGTTTTCCCCTTCCTGCACAAATCTAGAAAAGTTCACCTTCCTAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-297, - strand, RNAz p=0.98995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-297, - strand, RNAz p=0.98995

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-468, gnl|bosTau2|chr7 (5832478-5832020)
               

               
               1-468, gnl|Hg17|chr19 (16547519-16547024)
               

               
               1-468, gnl|Mm7|chr8 (71018369-71017939)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr7 (5832478-5832020)
               

               
               1-468, gnl|Hg17|chr19 (16547519-16547024)
               

               
               1-468, gnl|Mm7|chr8 (71018369-71017939)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fat (0.147427)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               eje (0.0988338)

	1-468, gnl\|bosTau2\|chr7 (5832478-5832020)
	1-468, gnl\|Hg17\|chr19 (16547519-16547024)
	1-468, gnl\|Mm7\|chr8 (71018369-71017939)