Non-Coding RNA Search

Ss1.1-Pig2-102I17.5

Sequence:


               
               TTCGGTACCTTAAAATCGCTTATTCCAGTGTGCTCCTTCTTAGGAAATCAATATTTTTCT
GCGTTCTTTATAAAAGATGAGAGCATTTGGCTATAAAAGAAATGGGCTGAATAGGCATGA
TTTTTCACGTAGCTGTTTTGGTCTTTAAAATCTAACCTGTAAAATTGGCACAAAAATTTT
TACCTTTTACAATATAATACTTGAAATATAAGTACCTCTTGGCTCCACAAGTAGAGTGAA
TAGGAGATGTGTCTAGGTTAAGCCTGTTTGTTCAAATATTATTGCAAAGAGCTCTACTTG
TAGAGGGAAATTATAGGCAGAGTACCAGGTTCTTGTAAATGCAACTTGTACATGGACACT
CTGCAAACCCCACTGTCCCGTTCTTCTTGCATCTCCTTTTTTGCAAAAGTGCACTCAAGT
TTTAAAATGTGAAAAAAAAAAATATTTTTTCAGAGCAGGAAAATAATTTACTGTCCTCTT
AAATAATGTATTTATAAAAAGTTTTTCAGATAAACTAATCAAATAAATTAGAACAATGTG
ACACTGCAAGATTTGATTTATGAGATGCATTCCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCGGTACCTTAAAATCGCTTATTCCAGTGTGCTCCTTCTTAGGAAATCAATATTTTTCT
GCGTTCTTTATAAAAGATGAGAGCATTTGGCTATAAAAGAAATGGGCTGAATAGGCATGA
TTTTTCACGTAGCTGTTTTGGTCTTTAAAATCTAACCTGTAAAATTGGCACAAAAATTTT
TACCTTTTACAATATAATACTTGAAATATAAGTACCTCTTGGCTCCACAAGTAGAGTGAA
TAGGAGATGTGTCTAGGTTAAGCCTGTTTGTTCAAATATTATTGCAAAGAGCTCTACTTG
TAGAGGGAAATTATAGGCAGAGTACCAGGTTCTTGTAAATGCAACTTGTACATGGACACT
CTGCAAACCCCACTGTCCCGTTCTTCTTGCATCTCCTTTTTTGCAAAAGTGCACTCAAGT
TTTAAAATGTGAAAAAAAAAAATATTTTTTCAGAGCAGGAAAATAATTTACTGTCCTCTT
AAATAATGTATTTATAAAAAGTTTTTCAGATAAACTAATCAAATAAATTAGAACAATGTG
ACACTGCAAGATTTGATTTATGAGATGCATTCCTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               194-311, + strand, RNAz p=0.804406

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-311, + strand, RNAz p=0.804406

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003980, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003980, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-576, gnl|bosTau2|chr9 (43659501-43660054)
               

               
               1-576, gnl|Hg17|chr6 (136706845-136706290)
               

               
               1-576, gnl|Mm7|chr10 (20004871-20005558)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr9 (43659501-43660054)
               

               
               1-576, gnl|Hg17|chr6 (136706845-136706290)
               

               
               1-576, gnl|Mm7|chr10 (20004871-20005558)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               sin (0.174948)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               jej (0.0989218)

	1-576, gnl\|bosTau2\|chr9 (43659501-43660054)
	1-576, gnl\|Hg17\|chr6 (136706845-136706290)
	1-576, gnl\|Mm7\|chr10 (20004871-20005558)