Ss1.1-Pig2-102K04.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGCCAACTACCAACTGGTCCAGCCCTGCCTTCCAGCAGCTCTCAGGAGTAACACAGAC CTGTGCCACCAAGTCCCTGGGGATGGATCAAGTGGCCCACTTCTCCTACCCATTCACATT TGAGGCCTCCTTCCTCCACGAGGATGAGTCTGCTGAGGCTCTCCCGGCATGGCCTGTGCT CTACTGCGAGGTCCTCTCCCTGGACTTCTGGCAGAGGTACCGCGTGGAAGGCTATGGGGC CGTGGTGCTGCCTGCCACCCCAGGCTCCCACACCCTGACGCTGTCCACGTGGAGGCCCCT GGAGCTCGGCACGGTGGCCGAGCTCAGGAGGTTTTTCATTGGCGGCTCGCTGGAGCTGGA GGACCTCTCCTACGTGCGGATCCCGGGAACCTTCAAGGGGGAGCGTCTGAGCCGCTTCGG CCTCCGCACCGAGACCACAGGCAGTGTCACCTTCCGCCTGCACTGTCTGCACCAGTCCAG GGCCTTCATGGAGTCAAGTTCCCTGCGGAAGAGGATGCGGAGTGTGCTGGACCGTCTGGA GGGATTCAGCCAGCAGAGTTCCATCCACAATGTGCTGGAGGCCTTCCGACGAGCTCGGCG CCGCATGCGGGAGGCCCGAGAAAGCCTCCCCCACGACCTAGTCAGCCCCTCGGGAACCAC GGTCTCCTAGCTCGCTGCAGCCCTGGCCCCCCTGCCGTACACGAGGACAAGATGCACGAG AGCCGAGGCCCGGGTCTCCCGCCTCTTCGTCTTCCTGATTAGAAACCACACTGACCTGCG AAGAACCAGACGAGCTGAGAGTCCCGGGCCGGGTGGTAACCAAGCTGAAGGCCCTGTGGC CCCAGGAAGGGTGCCCTCTTGGTATGTCAGCCACTGCAAGGGACCATCACAACCAGGCAG GCTTTTTGATTTGCGGCCAGTCTGGGGGTAGCCCTGCGTGAGTTCTGTCCCTGACACAGC CTCCCTCCTAGCCTGTCTCAGCCTCCCTGGTGGAGCTGCAGGACCTCCTGCCACAAGCCT GCTTCACACATGGAGGCCTGAGGAAGAAGGCGGGTGAGGCAGAGCTTACATTCCCGGCCT GGAGTCCAGGCTCCTCTTTGCAGGGCCGTCTCCCCCGGGACTGGGGCTTGTTGCATTTGA GATAGAACTTATTTCTGGAGCAAATGAAGGCTGAAGGCACCTCCCAGTCCTTTCTGGTAG CTGGCTGGTACCTTTTGTTGTGTGTGTGTGTCGGGGGGGGTGGTACAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGCCAACTACCAACTGGTCCAGCCCTGCCTTCCAGCAGCTCTCAGGAGTAACACAGAC CTGTGCCACCAAGTCCCTGGGGATGGATCAAGTGGCCCACTTCTCCTACCCATTCACATT TGAGGCCTCCTTCCTCCACGAGGATGAGTCTGCTGAGGCTCTCCCGGCATGGCCTGTGCT CTACTGCGAGGTCCTCTCCCTGGACTTCTGGCAGAGGTACCGCGTGGAAGGCTATGGGGC CGTGGTGCTGCCTGCCACCCCAGGCTCCCACACCCTGACGCTGTCCACGTGGAGGCCCCT GGAGCTCGGCACGGTGGCCGAGCTCAGGAGGTTTTTCATTGGCGGCTCGCTGGAGCTGGA GGACCTCTCCTACGTGCGGATCCCGGGAACCTTCAAGGGGGAGCGTCTGAGCCGCTTCGG CCTCCGCACCGAGACCACAGGCAGTGTCACCTTCCGCCTGCACTGTCTGCACCAGTCCAG GGCCTTCATGGAGTCAAGTTCCCTGCGGAAGAGGATGCGGAGTGTGCTGGACCGTCTGGA GGGATTCAGCCAGCAGAGTTCCATCCACAATGTGCTGGAGGCCTTCCGACGAGCTCGGCG CCGCATGCGGGAGGCCCGAGAAAGCCTCCCCCACGACCTAGTCAGCCCCTCGGGAACCAC GGTCTCCTAGCTCGCTGCAGCCCTGGCCCCCCTGCCGTACACGAGGACAAGATGCACGAG AGCCGAGGCCCGGGTCTCCCGCCTCTTCGTCTTCCTGATTAGAAACCACACTGACCTGCG AAGAACCAGACGAGCTGAGAGTCCCGGGCCGGGTGGTAACCAAGCTGAAGGCCCTGTGGC CCCAGGAAGGGTGCCCTCTTGGTATGTCAGCCACTGCAAGGGACCATCACAACCAGGCAG GCTTTTTGATTTGCGGCCAGTCTGGGGGTAGCCCTGCGTGAGTTCTGTCCCTGACACAGC CTCCCTCCTAGCCTGTCTCAGCCTCCCTGGTGGAGCTGCAGGACCTCCTGCCACAAGCCT GCTTCACACATGGAGGCCTGAGGAAGAAGGCGGGTGAGGCAGAGCTTACATTCCCGGCCT GGAGTCCAGGCTCCTCTTTGCAGGGCCGTCTCCCCCGGGACTGGGGCTTGTTGCATTTGA GATAGAACTTATTTCTGGAGCAAATGAAGGCTGAAGGCACCTCCCAGTCCTTTCTGGTAG CTGGCTGGTACCTTTTGTTGTGTGTGTGTGTCGGGGGGGGTGGTACAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 259-398, + strand, RNAz p=0.682959 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 259-398, + strand, RNAz p=0.682959 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 259-398, gnl|bosTau2|chr19 (3065746-3065607) | |
| 259-398, gnl|canFam2|chr9 (36190939-36191100) | |
| 259-398, gnl|danRer3|chr5 (61646482-61646343) | |
| 259-398, gnl|dasNov1|scaffold_34585 (3965-3804) | |
| 259-398, gnl|echTel1|scaffold_323737 (47989-48150) | |
| 259-398, gnl|fr1|chrUn (196275658-196275508) | |
| 259-398, gnl|galGal2|chr19 (49699-49861) | |
| 259-398, gnl|hg17|chr17 (53639431-53639592) | |
| 259-398, gnl|Hg17|chr17 (53639583-53639444) | |
| 259-398, gnl|loxAfr1|scaffold_6270 (3944-4105) | |
| 259-398, gnl|mm7|chr11 (87932040-87931881) | |
| 259-398, gnl|Mm7|chr11 (87931888-87932027) | |
| 259-398, gnl|monDom2|scaffold_56 (4920920-4920756) | |
| 259-398, gnl|oryCun1|scaffold_172811 (25483-25321) | |
| 259-398, gnl|panTro1|chr19_random (39375634-39375795) | |
| 259-398, gnl|rheMac2|chr16 (42436525-42436686) | |
| 259-398, gnl|rn3|chr10 (76172514-76172355) | |
| 259-398, gnl|tetNig1|chr7 (10213869-10213728) | |
| 259-398, gnl|xenTro1|scaffold_32 (384219-384369) | |
| 578-1098, gnl|bosTau2|chr19 (3064732-3064223) | |
| 578-1098, gnl|Hg17|chr17 (53638531-53637962) | |
| 578-1098, gnl|Mm7|chr11 (87932844-87933584) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 259-398, gnl|bosTau2|chr19 (3065746-3065607) | |
| 259-398, gnl|canFam2|chr9 (36190939-36191100) | |
| 259-398, gnl|danRer3|chr5 (61646482-61646343) | |
| 259-398, gnl|dasNov1|scaffold_34585 (3965-3804) | |
| 259-398, gnl|echTel1|scaffold_323737 (47989-48150) | |
| 259-398, gnl|fr1|chrUn (196275658-196275508) | |
| 259-398, gnl|galGal2|chr19 (49699-49861) | |
| 259-398, gnl|hg17|chr17 (53639431-53639592) | |
| 259-398, gnl|Hg17|chr17 (53639583-53639444) | |
| 259-398, gnl|loxAfr1|scaffold_6270 (3944-4105) | |
| 259-398, gnl|mm7|chr11 (87932040-87931881) | |
| 259-398, gnl|Mm7|chr11 (87931888-87932027) | |
| 259-398, gnl|monDom2|scaffold_56 (4920920-4920756) | |
| 259-398, gnl|oryCun1|scaffold_172811 (25483-25321) | |
| 259-398, gnl|panTro1|chr19_random (39375634-39375795) | |
| 259-398, gnl|rheMac2|chr16 (42436525-42436686) | |
| 259-398, gnl|rn3|chr10 (76172514-76172355) | |
| 259-398, gnl|tetNig1|chr7 (10213869-10213728) | |
| 259-398, gnl|xenTro1|scaffold_32 (384219-384369) | |
| 578-1098, gnl|bosTau2|chr19 (3064732-3064223) | |
| 578-1098, gnl|Hg17|chr17 (53638531-53637962) | |
| 578-1098, gnl|Mm7|chr11 (87932844-87933584) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fty (0.17584) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| ebs (0.118301) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| fhi (0.169578) | |
| cag (0.151194) | |
| ebs (0.118301) |