Ss1.1-Pig2-103D02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCTCCCCGACCCCAGCATCCCCCCCTTCTCAGTGGCCACCACCAACGGGACCATCTCCT TCACCCAGATGGTGCAGGGCATGGGAGCCGGGCTGGCCGTGGTGCCTCTGATGGGTCTCC TGGAGAGCATTGCAGTGGCCAAATCCTTTGCTTCTCAAAACAATTACCGTGTTGACGCCA ACCAGGAGCTGCTGGCCATTGGCCTGACCAACATCCTGGGCTCCCTCTTCTCCTCCTACC CGGTCACAGGCAGCTTTGGACGGACGGCTGTGAACGCCCAGTCGGGGGTGTGCACCCCAG CAGGGGGCCTGATGACAGGCGCCCTGGTGCTGCTGTCGCTCGACTACCTGACGTCGCTCT TCTACTACATCCCCAAGTCCGCCCTGGCCGCCGTCATCATCATGGCCGTGGCCCCCCTCT TCGACACCAAGATCCTGGGGACGCTCTGGCGCGTCAAGAGGCTGGACTTGCTGCCCCTCT GCGTGACGTTCCTGCTGTGCTTCTGGGAGGTCCAGTACGGCATCCTGGCGGGGACCCTGG TGTCCGTGGTGATTCTCCTGCACTCCGTGGCCAGACCCAAGATTCAGGTGTCGGAGGGGC CAGTGCTGATCCTCCAGCCGTCGAGCGGCCTGCACTTCCCTGCCATCGAGACCCTCCGCG AGATGGTACTGAGCCGGGCTCTGGAAACATCCCCGCCACGCTCGGTGGCCCTGGACTGCA CCCACATCTTCAGCATTGACTACACAGTGGTGCTGGGACTCGGGGAGCTCCTGGAGGACT TCCACAAGCGGGGCGCCACCCTGGCCCTCATCGGCCTGCAGGTTCCCGTTCTCCGTGTCC TGCTGTCTGCTGACCTGAAGGGCGTCCTGTACTTCTCCACCCTGGAAGAAGCAGAGAAGT ACCTGAAGCAGGAACCCGGGACCCAGCCCTACAACATCAGCGAAGACTCTGTCCCGGAGC ACAAGGTGGCCCTGCTGAAGGCCTGACGGGCGCCACTGGGCGCCCCTGGCGGAGGGTCTC TGGAAGGTTCTTGTCACTGTGATGCCGGATGCCGCCTTGCAGCAGATCTGAGGAGCCCGC AGGTGCCCCGAGGACGGGGAGGGACCGTGTGGGATCCGCAGGGACTCCTCCCGTCCCGTG GAGGGCGGAGGAAGGCCTCCGGGCTGTTCCGTGGACCTGAACACTTTTAAAGAGCGGTTT GGAGAGAGCCTTCTAGAATGGTAGACCGGGAAGGGCAGTGACGTCAGCCCGGTCTAGGAG AGCAGTCCTCCCGGCCCAGCGCCTTCCTGGATTTCGGGGGAATGGGGAGGGCGGGCATCT CTCAGGGGGCTTCCCTTCTTGATGGCGGCGGCTGTGCTGTTGTTGGGAGGAAAACCAAGG TTTGCCAAATGACTGAAAGCGTCTATTAAAAATAACTTTACGGTGTTTTCTAAGTGTGAA AAAGTAACAGCTTTGGTGTTTTTGTAAAAACCATAAATGCTCATTGTAACAACTGCGGGA AGCATCTCTGTCATCCACTCGGTGGTGGCCCCGGGCCGCCTCCCTCCCGCGCGCGTCCGT GGGACGTCGGCTCGCGGGGTGGGCTTCCGGTCACGTCAGTGGGATCATTTCATCCATGGT GCTCTGTGACCCCCATTTTCATGCAGCCGTTGCTGTGGACTACTTGTTGTGATAATAAAT AGAGACTATATGATTAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCTCCCCGACCCCAGCATCCCCCCCTTCTCAGTGGCCACCACCAACGGGACCATCTCCT TCACCCAGATGGTGCAGGGCATGGGAGCCGGGCTGGCCGTGGTGCCTCTGATGGGTCTCC TGGAGAGCATTGCAGTGGCCAAATCCTTTGCTTCTCAAAACAATTACCGTGTTGACGCCA ACCAGGAGCTGCTGGCCATTGGCCTGACCAACATCCTGGGCTCCCTCTTCTCCTCCTACC CGGTCACAGGCAGCTTTGGACGGACGGCTGTGAACGCCCAGTCGGGGGTGTGCACCCCAG CAGGGGGCCTGATGACAGGCGCCCTGGTGCTGCTGTCGCTCGACTACCTGACGTCGCTCT TCTACTACATCCCCAAGTCCGCCCTGGCCGCCGTCATCATCATGGCCGTGGCCCCCCTCT TCGACACCAAGATCCTGGGGACGCTCTGGCGCGTCAAGAGGCTGGACTTGCTGCCCCTCT GCGTGACGTTCCTGCTGTGCTTCTGGGAGGTCCAGTACGGCATCCTGGCGGGGACCCTGG TGTCCGTGGTGATTCTCCTGCACTCCGTGGCCAGACCCAAGATTCAGGTGTCGGAGGGGC CAGTGCTGATCCTCCAGCCGTCGAGCGGCCTGCACTTCCCTGCCATCGAGACCCTCCGCG AGATGGTACTGAGCCGGGCTCTGGAAACATCCCCGCCACGCTCGGTGGCCCTGGACTGCA CCCACATCTTCAGCATTGACTACACAGTGGTGCTGGGACTCGGGGAGCTCCTGGAGGACT TCCACAAGCGGGGCGCCACCCTGGCCCTCATCGGCCTGCAGGTTCCCGTTCTCCGTGTCC TGCTGTCTGCTGACCTGAAGGGCGTCCTGTACTTCTCCACCCTGGAAGAAGCAGAGAAGT ACCTGAAGCAGGAACCCGGGACCCAGCCCTACAACATCAGCGAAGACTCTGTCCCGGAGC ACAAGGTGGCCCTGCTGAAGGCCTGACGGGCGCCACTGGGCGCCCCTGGCGGAGGGTCTC TGGAAGGTTCTTGTCACTGTGATGCCGGATGCCGCCTTGCAGCAGATCTGAGGAGCCCGC AGGTGCCCCGAGGACGGGGAGGGACCGTGTGGGATCCGCAGGGACTCCTCCCGTCCCGTG GAGGGCGGAGGAAGGCCTCCGGGCTGTTCCGTGGACCTGAACACTTTTAAAGAGCGGTTT GGAGAGAGCCTTCTAGAATGGTAGACCGGGAAGGGCAGTGACGTCAGCCCGGTCTAGGAG AGCAGTCCTCCCGGCCCAGCGCCTTCCTGGATTTCGGGGGAATGGGGAGGGCGGGCATCT CTCAGGGGGCTTCCCTTCTTGATGGCGGCGGCTGTGCTGTTGTTGGGAGGAAAACCAAGG TTTGCCAAATGACTGAAAGCGTCTATTAAAAATAACTTTACGGTGTTTTCTAAGTGTGAA AAAGTAACAGCTTTGGTGTTTTTGTAAAAACCATAAATGCTCATTGTAACAACTGCGGGA AGCATCTCTGTCATCCACTCGGTGGTGGCCCCGGGCCGCCTCCCTCCCGCGCGCGTCCGT GGGACGTCGGCTCGCGGGGTGGGCTTCCGGTCACGTCAGTGGGATCATTTCATCCATGGT GCTCTGTGACCCCCATTTTCATGCAGCCGTTGCTGTGGACTACTTGTTGTGATAATAAAT AGAGACTATATGATTAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 316-490, gnl|bosTau2|chr19 (47295342-47295517) | |
| 316-490, gnl|canFam2|chr9 (4516761-4516653) | |
| 316-490, gnl|danRer3|chr22 (9937079-9936971) | |
| 316-490, gnl|dasNov1|scaffold_54199 (10405-10513) | |
| 316-490, gnl|echTel1|scaffold_228931 (698-590) | |
| 316-490, gnl|fr1|chrUn (148455529-148455421) | |
| 316-490, gnl|galGal2|chr3_random (471845-471737) | |
| 316-490, gnl|hg17|chr17 (75834901-75835009) | |
| 316-490, gnl|Hg17|chr17 (75834900-75835049) | |
| 316-490, gnl|loxAfr1|scaffold_171539 (1434-1326) | |
| 316-490, gnl|mm7|chr11 (119483808-119483916) | |
| 316-490, gnl|Mm7|chr11 (119483807-119483956) | |
| 316-490, gnl|oryCun1|scaffold_55500 (1517-1625) | |
| 316-490, gnl|panTro1|chr19 (79537717-79537825) | |
| 316-490, gnl|rheMac2|chr16 (75707502-75707610) | |
| 316-490, gnl|rn3|chr10 (108751086-108751194) | |
| 316-490, gnl|tetNig1|chr18 (2106554-2106446) | |
| 316-490, gnl|xenTro1|scaffold_413 (751887-751779) | |
| 688-823, gnl|bosTau2|chr19 (47297040-47297175) | |
| 688-823, gnl|canFam2|chr9 (4514020-4513849) | |
| 688-823, gnl|danRer3|chr22 (9934312-9934159) | |
| 688-823, gnl|dasNov1|scaffold_54199 (13580-13758) | |
| 688-823, gnl|echTel1|scaffold_158190 (5208-5044) | |
| 688-823, gnl|fr1|chrUn (148454522-148454363) | |
| 688-823, gnl|galGal2|chr3_random (470945-470771) | |
| 688-823, gnl|hg17|chr17 (75837526-75837699) | |
| 688-823, gnl|Hg17|chr17 (75837548-75837683) | |
| 688-823, gnl|mm7|chr11 (119486718-119486888) | |
| 688-823, gnl|Mm7|chr11 (119486739-119486874) | |
| 688-823, gnl|panTro1|chr19 (79540553-79540726) | |
| 688-823, gnl|rn3|chr10 (108753295-108753455) | |
| 688-823, gnl|tetNig1|chr18 (2101726-2101566) | |
| 891-1694, gnl|bosTau2|chr19 (47298334-47299180) | |
| 891-1694, gnl|Hg17|chr17 (75841015-75841897) | |
| 891-1694, gnl|Mm7|chr11 (119489226-119490041) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 316-490, gnl|bosTau2|chr19 (47295342-47295517) | |
| 316-490, gnl|canFam2|chr9 (4516761-4516653) | |
| 316-490, gnl|danRer3|chr22 (9937079-9936971) | |
| 316-490, gnl|dasNov1|scaffold_54199 (10405-10513) | |
| 316-490, gnl|echTel1|scaffold_228931 (698-590) | |
| 316-490, gnl|fr1|chrUn (148455529-148455421) | |
| 316-490, gnl|galGal2|chr3_random (471845-471737) | |
| 316-490, gnl|hg17|chr17 (75834901-75835009) | |
| 316-490, gnl|Hg17|chr17 (75834900-75835049) | |
| 316-490, gnl|loxAfr1|scaffold_171539 (1434-1326) | |
| 316-490, gnl|mm7|chr11 (119483808-119483916) | |
| 316-490, gnl|Mm7|chr11 (119483807-119483956) | |
| 316-490, gnl|oryCun1|scaffold_55500 (1517-1625) | |
| 316-490, gnl|panTro1|chr19 (79537717-79537825) | |
| 316-490, gnl|rheMac2|chr16 (75707502-75707610) | |
| 316-490, gnl|rn3|chr10 (108751086-108751194) | |
| 316-490, gnl|tetNig1|chr18 (2106554-2106446) | |
| 316-490, gnl|xenTro1|scaffold_413 (751887-751779) | |
| 688-823, gnl|bosTau2|chr19 (47297040-47297175) | |
| 688-823, gnl|canFam2|chr9 (4514020-4513849) | |
| 688-823, gnl|danRer3|chr22 (9934312-9934159) | |
| 688-823, gnl|dasNov1|scaffold_54199 (13580-13758) | |
| 688-823, gnl|echTel1|scaffold_158190 (5208-5044) | |
| 688-823, gnl|fr1|chrUn (148454522-148454363) | |
| 688-823, gnl|galGal2|chr3_random (470945-470771) | |
| 688-823, gnl|hg17|chr17 (75837526-75837699) | |
| 688-823, gnl|Hg17|chr17 (75837548-75837683) | |
| 688-823, gnl|mm7|chr11 (119486718-119486888) | |
| 688-823, gnl|Mm7|chr11 (119486739-119486874) | |
| 688-823, gnl|panTro1|chr19 (79540553-79540726) | |
| 688-823, gnl|rn3|chr10 (108753295-108753455) | |
| 688-823, gnl|tetNig1|chr18 (2101726-2101566) | |
| 891-1694, gnl|bosTau2|chr19 (47298334-47299180) | |
| 891-1694, gnl|Hg17|chr17 (75841015-75841897) | |
| 891-1694, gnl|Mm7|chr11 (119489226-119490041) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| hyp (0.85702) | |
| ece (0.687916) | |
| fhi (0.678311) | |
| amn (0.417711) | |
| fbs (0.175346) | |
| lnt (0.142308) | |
| eje (0.0988338) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.85702) | |
| ece (0.687916) | |
| fhi (0.678311) | |
| amn (0.417711) | |
| fbs (0.175346) | |
| lnt (0.142308) | |
| eje (0.0988338) |