Non-Coding RNA Search

Ss1.1-Pig2-103G05.5

Sequence:


               
               ATCATGGCCGTCGGCATCACCACGACCGTCTGCTTCACGGTGGTCATCTTCTCCCTGCAG
ACGCGCTATGACTTCACCTCCTGCATGGGCGTGCTGCTGGTCAGCATGGTGGTGCTGCTC
GTCTTCACCCTTCTCTGCATCTTCATCCGGAACCGCATCCTGGAGATCGTGTACGCCTCG
CTCGGCGCTCTGCTCTTCACCTGCTTCCTGGCAGTGGACACGCAGCTGCTGCTGGGGAAC
AAGCAGCTGTCCCTGAGCCCGGAGGAGCACGTGTTTGCCGCGCTCAACCTCTACACCGAC
ATCATCAACATCTTCCTGTACGTCCTCACCATCATCGGCCGCGCCAAGGAGTAGCCGGGC
GCCCGGCTCGCGCGGGGCTCCGCTCAGGTGGCCTGGCTGGCCCGGACCCTGGCCTTGGTG
TGGCAGTTCCTCTGGACCTCCCCCTCTCGCCCCCGAGCACAGCCCGGGACAGAGGGAGCC
CCCCCCCACCCTCCCGTGCGTATACCGCAGCCACGTCTGCCCGGACCCGCCACGGCCAGC
ATGGCCCCTCCTAGCCTCCCACCCTGCCGAGGGCCGCGGAGCTGGGTGTCCGTGCCACCT
CCTGCCCTGCCCACTCACTGTTGCATGAGCCCCGACCGCTAGCCCGCCCCGGGGTCTGGC
GGCAACCCCAGGTCCCAGGGGAGAGGGACTGAGCCCAGAGGTGAGGGTGCACGTCTCCCC
TCTGTCCCAGCTCCCTGCCTGGCCTGGAGCAGCCCTTCCCCTCCCTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATGGCCGTCGGCATCACCACGACCGTCTGCTTCACGGTGGTCATCTTCTCCCTGCAG
ACGCGCTATGACTTCACCTCCTGCATGGGCGTGCTGCTGGTCAGCATGGTGGTGCTGCTC
GTCTTCACCCTTCTCTGCATCTTCATCCGGAACCGCATCCTGGAGATCGTGTACGCCTCG
CTCGGCGCTCTGCTCTTCACCTGCTTCCTGGCAGTGGACACGCAGCTGCTGCTGGGGAAC
AAGCAGCTGTCCCTGAGCCCGGAGGAGCACGTGTTTGCCGCGCTCAACCTCTACACCGAC
ATCATCAACATCTTCCTGTACGTCCTCACCATCATCGGCCGCGCCAAGGAGTAGCCGGGC
GCCCGGCTCGCGCGGGGCTCCGCTCAGGTGGCCTGGCTGGCCCGGACCCTGGCCTTGGTG
TGGCAGTTCCTCTGGACCTCCCCCTCTCGCCCCCGAGCACAGCCCGGGACAGAGGGAGCC
CCCCCCCACCCTCCCGTGCGTATACCGCAGCCACGTCTGCCCGGACCCGCCACGGCCAGC
ATGGCCCCTCCTAGCCTCCCACCCTGCCGAGGGCCGCGGAGCTGGGTGTCCGTGCCACCT
CCTGCCCTGCCCACTCACTGTTGCATGAGCCCCGACCGCTAGCCCGCCCCGGGGTCTGGC
GGCAACCCCAGGTCCCAGGGGAGAGGGACTGAGCCCAGAGGTGAGGGTGCACGTCTCCCC
TCTGTCCCAGCTCCCTGCCTGGCCTGGAGCAGCCCTTCCCCTCCCTGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q9CWB0_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q9CWB0_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               652-764, + strand, RNAz p=0.562271

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               652-764, + strand, RNAz p=0.562271

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_000837, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000837, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               176-764, gnl|bosTau2|chr14 (228151-227573)
               

               
               176-764, gnl|Hg17|chr8 (145138819-145139412)
               

               
               176-764, gnl|Mm7|chr15 (76331740-76332321)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               176-764, gnl|bosTau2|chr14 (228151-227573)
               

               
               176-764, gnl|Hg17|chr8 (145138819-145139412)
               

               
               176-764, gnl|Mm7|chr15 (76331740-76332321)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               hyp (0.142837)
               

               
               cbr (0.127975)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cbr (0.127975)

	176-764, gnl\|bosTau2\|chr14 (228151-227573)
	176-764, gnl\|Hg17\|chr8 (145138819-145139412)
	176-764, gnl\|Mm7\|chr15 (76331740-76332321)