Non-Coding RNA Search

Ss1.1-Pig2-103I11.5

Sequence:


               
               CTTCTCTGCCATCTCTAGGTGGCTCGGCCCGCGGCCACTCCCTGTCCCCAGCCTGGCTGG
ACAGCAGGGAGTCTGCAGCCCCCCAGGTGGGCCCCCTCCTCGCTCCCAGGCTCAGAAGCC
CCTTCTTGCCAGCCCCCCCTCCACCTCCAGCCCATCTGTCTCTCCTTGTTTCTGGTGATG
GGGAGGCCTTTCTAGACTCGGTTCTCTTTCTCCCATCTCAGTTTCTCTGAGGTGCTGCAT
TAGCCCTGGTTTCTCCTCCACCTCTCACCGTGGTACCGAGGTGATGCCGACACAGATGTG
AAGGGTGCCTGGCGGGCGGCTGAGGAGGGTGCCCTGGGCCCGCATGCTTGCCCGCCTTCT
CGCTCCCGTCAGCCCTCTGCGTTCAGAGAATGGGGACCCTTCTCCCCTCCTGCCCCTGCC
TTCTGAGAGGTGTGGTGTCCCTCCCAGCAGGCCACCAGGGTCCTTCCTGGGGGCTTTGGG
GCCTACAGAGAGAATTATAGGGACTGGGGGGTCCGGCCTGGCTTGAGAACAGCCCTGCTG
CCCTTTTTTGAGCCGCGATTTTGAAGTGGATGCCCGTCTTGCCAGAAATGCTGTTCTCAC
CAGAGTGCCCTCCCCTCCCTGGACTCGGCCCTGCCCAGCGCCAAGCAGAGACCCTTCCTG
GCCTGGCCCTCAGAGCGGCCGAGAGTTCCCCTCCAGGCAGCCCCTGGCCCTCGGGCCCTG
CCTGCCTGCTCTTGTTCCCCAGTGGGGAGGTGACCAAGGCCTGCGTGACCTTGTTTCCCA
GAGAATGAGCTGCCCCTCCCCCAGAGCTGACTCACTGTGAGTGACTTGGGCAAGTTCCCA
AACCTCCTTGTGCCTCAGTTTCCCCATCTGGAAAAAATGGGGCCACCTCTTGCCAGCAGT
AGCAGGGCCGCCCATGCCCCTTCCTCCCCGTGCCCCGTCCCAGCCCCTGGGCGCCCCGTG
CCTCTGCCTCAGTGGGTCCGTGGGGGCCCACCTGAGCCCGGCACTTCCTCCCCTGAGCAC
CGGGCTCTGCCTCCCTCAGCCGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTCTGCCATCTCTAGGTGGCTCGGCCCGCGGCCACTCCCTGTCCCCAGCCTGGCTGG
ACAGCAGGGAGTCTGCAGCCCCCCAGGTGGGCCCCCTCCTCGCTCCCAGGCTCAGAAGCC
CCTTCTTGCCAGCCCCCCCTCCACCTCCAGCCCATCTGTCTCTCCTTGTTTCTGGTGATG
GGGAGGCCTTTCTAGACTCGGTTCTCTTTCTCCCATCTCAGTTTCTCTGAGGTGCTGCAT
TAGCCCTGGTTTCTCCTCCACCTCTCACCGTGGTACCGAGGTGATGCCGACACAGATGTG
AAGGGTGCCTGGCGGGCGGCTGAGGAGGGTGCCCTGGGCCCGCATGCTTGCCCGCCTTCT
CGCTCCCGTCAGCCCTCTGCGTTCAGAGAATGGGGACCCTTCTCCCCTCCTGCCCCTGCC
TTCTGAGAGGTGTGGTGTCCCTCCCAGCAGGCCACCAGGGTCCTTCCTGGGGGCTTTGGG
GCCTACAGAGAGAATTATAGGGACTGGGGGGTCCGGCCTGGCTTGAGAACAGCCCTGCTG
CCCTTTTTTGAGCCGCGATTTTGAAGTGGATGCCCGTCTTGCCAGAAATGCTGTTCTCAC
CAGAGTGCCCTCCCCTCCCTGGACTCGGCCCTGCCCAGCGCCAAGCAGAGACCCTTCCTG
GCCTGGCCCTCAGAGCGGCCGAGAGTTCCCCTCCAGGCAGCCCCTGGCCCTCGGGCCCTG
CCTGCCTGCTCTTGTTCCCCAGTGGGGAGGTGACCAAGGCCTGCGTGACCTTGTTTCCCA
GAGAATGAGCTGCCCCTCCCCCAGAGCTGACTCACTGTGAGTGACTTGGGCAAGTTCCCA
AACCTCCTTGTGCCTCAGTTTCCCCATCTGGAAAAAATGGGGCCACCTCTTGCCAGCAGT
AGCAGGGCCGCCCATGCCCCTTCCTCCCCGTGCCCCGTCCCAGCCCCTGGGCGCCCCGTG
CCTCTGCCTCAGTGGGTCCGTGGGGGCCCACCTGAGCCCGGCACTTCCTCCCCTGAGCAC
CGGGCTCTGCCTCCCTCAGCCGTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-199, - strand, RNAz p=0.998445
               

               
               366-786, - strand, RNAz p=0.900993

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-199, - strand, RNAz p=0.998445
               

               
               366-786, - strand, RNAz p=0.900993

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               18-165, - strand, RNAmicro p=0.999334

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               18-165, - strand, RNAmicro p=0.999334

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-322, gnl|bosTau2|chr3 (76594769-76595094)
               

               
               1-322, gnl|Hg17|chr1 (36475875-36475535)
               

               
               1-322, gnl|Mm7|chr4 (125584225-125584510)
               


               
               366-842, gnl|bosTau2|chr3 (76595104-76595600)
               

               
               366-842, gnl|Hg17|chr1 (36475521-36475023)
               

               
               366-842, gnl|Mm7|chr4 (125584519-125584960)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-322, gnl|bosTau2|chr3 (76594769-76595094)
               

               
               1-322, gnl|Hg17|chr1 (36475875-36475535)
               

               
               1-322, gnl|Mm7|chr4 (125584225-125584510)
               


               
               366-842, gnl|bosTau2|chr3 (76595104-76595600)
               

               
               366-842, gnl|Hg17|chr1 (36475521-36475023)
               

               
               366-842, gnl|Mm7|chr4 (125584519-125584960)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cty (0.20816)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	1-199, - strand, RNAz p=0.998445
	366-786, - strand, RNAz p=0.900993

	1-322, gnl\|bosTau2\|chr3 (76594769-76595094)
	1-322, gnl\|Hg17\|chr1 (36475875-36475535)
	1-322, gnl\|Mm7\|chr4 (125584225-125584510)

	366-842, gnl\|bosTau2\|chr3 (76595104-76595600)
	366-842, gnl\|Hg17\|chr1 (36475521-36475023)
	366-842, gnl\|Mm7\|chr4 (125584519-125584960)