Non-Coding RNA Search

Ss1.1-Pig2-103P09.5

Sequence:


               
               AGAGAATGCCCTCTATGCTAGAGAAGTCCCAATCCTAGCATTTGGGTATGGGGAGGGCGT
GGTGCTTTAGCTTTGATACTTCTGTATGAAAATGAGGAGCGGGGGTACCAGCTGCCCTAG
GGGATGGGGAGAGGCTACCAAAATCCCTACTTTGTGCTTCACTTCATTTCCTGCCAACAC
CCCCAGCCCAACCTCTGTCAGCTAGGAAGACATTCAGGGATTGCTCTCTGAGGCCTGCAC
AGAGAACAGAAGAGTTATACTACTGCTGCAAGCCAGGGACACTGCCCCTCCCAAGGCTGC
TACCCTGGCCCTTTACTCTTGCTAGTTAACCTAGTTCATTTGTAAAATAACACATCACCT
TTGCTGTAAAGTTAGCCTGGGCTCCGGGCTTGGTCATGGCCAATTCTACTGCAGCACAAG
TTTCTAGAGATGGTTTTCCCATTCACTGCATTTAAGACTAATGTACCTAGGAGGAAAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGAATGCCCTCTATGCTAGAGAAGTCCCAATCCTAGCATTTGGGTATGGGGAGGGCGT
GGTGCTTTAGCTTTGATACTTCTGTATGAAAATGAGGAGCGGGGGTACCAGCTGCCCTAG
GGGATGGGGAGAGGCTACCAAAATCCCTACTTTGTGCTTCACTTCATTTCCTGCCAACAC
CCCCAGCCCAACCTCTGTCAGCTAGGAAGACATTCAGGGATTGCTCTCTGAGGCCTGCAC
AGAGAACAGAAGAGTTATACTACTGCTGCAAGCCAGGGACACTGCCCCTCCCAAGGCTGC
TACCCTGGCCCTTTACTCTTGCTAGTTAACCTAGTTCATTTGTAAAATAACACATCACCT
TTGCTGTAAAGTTAGCCTGGGCTCCGGGCTTGGTCATGGCCAATTCTACTGCAGCACAAG
TTTCTAGAGATGGTTTTCCCATTCACTGCATTTAAGACTAATGTACCTAGGAGGAAAGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               254-404, - strand, RNAz p=0.790764

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-404, - strand, RNAz p=0.790764

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               127-461, gnl|bosTau2|chr3 (5001313-5001651)
               

               
               127-461, gnl|Hg17|chr1 (156820821-156820434)
               

               
               127-461, gnl|Mm7|chr1 (172343815-172344154)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-461, gnl|bosTau2|chr3 (5001313-5001651)
               

               
               127-461, gnl|Hg17|chr1 (156820821-156820434)
               

               
               127-461, gnl|Mm7|chr1 (172343815-172344154)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.285673)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)

	127-461, gnl\|bosTau2\|chr3 (5001313-5001651)
	127-461, gnl\|Hg17\|chr1 (156820821-156820434)
	127-461, gnl\|Mm7\|chr1 (172343815-172344154)