Ss1.1-Pig2-104A19.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGGTGAAGCCCCAGGACGTCCTTCAGGTGCTCCAGAAAGTTCAGCTGGACAACGACCA CAAAGAGGCCGTCATGGAGAAACTGCATTCCCGCGATGCCTTGCTGTCGGCTGACGAGTT TCAGAAGCTCTTTGATACATTCGACAAGAGGGTGACTAAAGAGCACCCGCCGCGGCCCGA GTACCAGTCTCCGTTTCTGCGGAGTGCCCAGTTCCTCTTCGGCCACCGCTACTTTGACTA CCTGGGCAACCTCATGGCTCTTGGAAACCTGGTGACCATCTGCGTGTTCCTGGTGTTGGA TGCAGACATACGGCCCGAGGACCGGGACGATTTCGTGCTGGGGATCCTCAACTGCGTCTT CATCCTGTACTACCTGCTGGAGATGCTGCTCAAGGTGTTCGCCCTGGGCCTGCTGGGGTA CCTGGCCTCCCCCAGCAATGTGTTTGACGGGCTTCTCACCATCGTCCTGCTGGTTTGGGA GATCTCAACTCTGGCCGTGTACCACTTCCCACACCCGGGCTGGAAGCCAGAGATGCTGGG GCTGCTGTCGCTGTGGGACATGACCCGGCTGGCGAACATGCTCATCGTCTTCCGCTTCCT GCGCATCATCCCCAGCATGAAGCTGATGGCCGTGGGGGCCAGTACCATCCTGGACCTGAT CAAAAACATGCGGGCCTTCGGCGGGATCCTCTTGGTGGTCTACTACGTCTTCGCCATCAT CGGCATCAGCCTGTTCCGAGGCGTCGTCGTGCTTCCTGCAAATAGCAGCCTGGCCCCTGA CAACGGCTCAGCACCCTGTGGGAGCTACGAGCAGCTGGAGTACTGGGCCAACAACTTCGA CGACTTTGCTCAGGCTGCCCTGGTCACTCTGTGGAACGTGATGGTTGTGAACAACTGGCA AGTCTTCCTGGATGCCTTCCAGCGCTTCGTGGGCCCGTGGTCGAAGATCTATTTTGTGCT GTGGTGGCTGGTGTCGTCTGTCGTCTGGGTCAACCTGTTTCTGGCTCTGATCCTGGAGAA CTTTCTTCACAAGTGGGACCGCCGCGGTCACCTAGAGCCTCTCGCGGGGGATTCGGGGGC CTCGTCTCAGATGACGGTGGAGCTCTTGTTCAGGGATGTCCTGGAGGAGCCCACGGAGGA GGAGCTGATGGAGAAGCTGAGCCACCACCCGCACCTGCAGCTGTGCAGGTGACGTCCAGG TGCGCCTTCCTGGCTGGGCCGGCGGATGGCGGTGCGGCCGGGGGAGGAGGAGGCGGTGGC GGCGGCGGCCCCGGAGGAGAGGCTTCCCCTCGGAGAGAACCACTGCAGCGCCCGAGCCAG GGGCAGATGCGGGGCCCGTTCGATGCCCAGCAGGACCACGTCCGTGGCTTTGGGTGCATC CACGCCACTTTCCTTTGTGAGCTAATTCCGTGGGATGTGTTTTTCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGGTGAAGCCCCAGGACGTCCTTCAGGTGCTCCAGAAAGTTCAGCTGGACAACGACCA CAAAGAGGCCGTCATGGAGAAACTGCATTCCCGCGATGCCTTGCTGTCGGCTGACGAGTT TCAGAAGCTCTTTGATACATTCGACAAGAGGGTGACTAAAGAGCACCCGCCGCGGCCCGA GTACCAGTCTCCGTTTCTGCGGAGTGCCCAGTTCCTCTTCGGCCACCGCTACTTTGACTA CCTGGGCAACCTCATGGCTCTTGGAAACCTGGTGACCATCTGCGTGTTCCTGGTGTTGGA TGCAGACATACGGCCCGAGGACCGGGACGATTTCGTGCTGGGGATCCTCAACTGCGTCTT CATCCTGTACTACCTGCTGGAGATGCTGCTCAAGGTGTTCGCCCTGGGCCTGCTGGGGTA CCTGGCCTCCCCCAGCAATGTGTTTGACGGGCTTCTCACCATCGTCCTGCTGGTTTGGGA GATCTCAACTCTGGCCGTGTACCACTTCCCACACCCGGGCTGGAAGCCAGAGATGCTGGG GCTGCTGTCGCTGTGGGACATGACCCGGCTGGCGAACATGCTCATCGTCTTCCGCTTCCT GCGCATCATCCCCAGCATGAAGCTGATGGCCGTGGGGGCCAGTACCATCCTGGACCTGAT CAAAAACATGCGGGCCTTCGGCGGGATCCTCTTGGTGGTCTACTACGTCTTCGCCATCAT CGGCATCAGCCTGTTCCGAGGCGTCGTCGTGCTTCCTGCAAATAGCAGCCTGGCCCCTGA CAACGGCTCAGCACCCTGTGGGAGCTACGAGCAGCTGGAGTACTGGGCCAACAACTTCGA CGACTTTGCTCAGGCTGCCCTGGTCACTCTGTGGAACGTGATGGTTGTGAACAACTGGCA AGTCTTCCTGGATGCCTTCCAGCGCTTCGTGGGCCCGTGGTCGAAGATCTATTTTGTGCT GTGGTGGCTGGTGTCGTCTGTCGTCTGGGTCAACCTGTTTCTGGCTCTGATCCTGGAGAA CTTTCTTCACAAGTGGGACCGCCGCGGTCACCTAGAGCCTCTCGCGGGGGATTCGGGGGC CTCGTCTCAGATGACGGTGGAGCTCTTGTTCAGGGATGTCCTGGAGGAGCCCACGGAGGA GGAGCTGATGGAGAAGCTGAGCCACCACCCGCACCTGCAGCTGTGCAGGTGACGTCCAGG TGCGCCTTCCTGGCTGGGCCGGCGGATGGCGGTGCGGCCGGGGGAGGAGGAGGCGGTGGC GGCGGCGGCCCCGGAGGAGAGGCTTCCCCTCGGAGAGAACCACTGCAGCGCCCGAGCCAG GGGCAGATGCGGGGCCCGTTCGATGCCCAGCAGGACCACGTCCGTGGCTTTGGGTGCATC CACGCCACTTTCCTTTGTGAGCTAATTCCGTGGGATGTGTTTTTCTAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 162-286, gnl|bosTau2|chr29 (41619496-41619372) | |
| 162-286, gnl|canFam2|chr18 (51993329-51993192) | |
| 162-286, gnl|dasNov1|scaffold_77896 (1088-948) | |
| 162-286, gnl|echTel1|scaffold_284856 (2796-2653) | |
| 162-286, gnl|galGal2|chr5 (14386211-14386343) | |
| 162-286, gnl|hg17|chr11 (68602525-68602662) | |
| 162-286, gnl|Hg17|chr11 (68602524-68602648) | |
| 162-286, gnl|loxAfr1|scaffold_107703 (647-784) | |
| 162-286, gnl|mm7|chr7 (141689974-141689837) | |
| 162-286, gnl|Mm7|chr7 (141689973-141689849) | |
| 162-286, gnl|panTro1|chr9 (69660523-69660660) | |
| 162-286, gnl|rheMac2|chr14 (5681589-5681452) | |
| 162-286, gnl|rn3|chr1 (205864636-205864499) | |
| 162-286, gnl|tetNig1|chrUn_random (32940179-32940306) | |
| 162-286, gnl|xenTro1|scaffold_76 (1111629-1111766) | |
| 343-474, gnl|bosTau2|chr29 (41618046-41617915) | |
| 343-474, gnl|Hg17|chr11 (68602935-68603066) | |
| 343-474, gnl|Mm7|chr7 (141688705-141688574) | |
| 519-622, gnl|bosTau2|chr29 (41615932-41615829) | |
| 519-622, gnl|canFam2|chr18 (51988889-51988775) | |
| 519-622, gnl|danRer3|chr7 (27558922-27558808) | |
| 519-622, gnl|echTel1|scaffold_284856 (996-886) | |
| 519-622, gnl|galGal2|chr5 (14388300-14388405) | |
| 519-622, gnl|hg17|chr11 (68605441-68605555) | |
| 519-622, gnl|Hg17|chr11 (68605440-68605543) | |
| 519-622, gnl|loxAfr1|scaffold_107703 (4006-4120) | |
| 519-622, gnl|mm7|chr7 (141686323-141686212) | |
| 519-622, gnl|Mm7|chr7 (141686324-141686219) | |
| 519-622, gnl|panTro1|chr9 (69663500-69663614) | |
| 519-622, gnl|rheMac2|chr14 (5678683-5678569) | |
| 519-622, gnl|rn3|chr1 (205861015-205860904) | |
| 519-622, gnl|tetNig1|chrUn_random (32944142-32944220) | |
| 519-622, gnl|xenTro1|scaffold_76 (1115847-1115955) | |
| 1111-1428, gnl|bosTau2|chr29 (41610049-41609724) | |
| 1111-1428, gnl|Hg17|chr11 (68611916-68612252) | |
| 1111-1428, gnl|Mm7|chr7 (141682405-141682056) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 162-286, gnl|bosTau2|chr29 (41619496-41619372) | |
| 162-286, gnl|canFam2|chr18 (51993329-51993192) | |
| 162-286, gnl|dasNov1|scaffold_77896 (1088-948) | |
| 162-286, gnl|echTel1|scaffold_284856 (2796-2653) | |
| 162-286, gnl|galGal2|chr5 (14386211-14386343) | |
| 162-286, gnl|hg17|chr11 (68602525-68602662) | |
| 162-286, gnl|Hg17|chr11 (68602524-68602648) | |
| 162-286, gnl|loxAfr1|scaffold_107703 (647-784) | |
| 162-286, gnl|mm7|chr7 (141689974-141689837) | |
| 162-286, gnl|Mm7|chr7 (141689973-141689849) | |
| 162-286, gnl|panTro1|chr9 (69660523-69660660) | |
| 162-286, gnl|rheMac2|chr14 (5681589-5681452) | |
| 162-286, gnl|rn3|chr1 (205864636-205864499) | |
| 162-286, gnl|tetNig1|chrUn_random (32940179-32940306) | |
| 162-286, gnl|xenTro1|scaffold_76 (1111629-1111766) | |
| 343-474, gnl|bosTau2|chr29 (41618046-41617915) | |
| 343-474, gnl|Hg17|chr11 (68602935-68603066) | |
| 343-474, gnl|Mm7|chr7 (141688705-141688574) | |
| 519-622, gnl|bosTau2|chr29 (41615932-41615829) | |
| 519-622, gnl|canFam2|chr18 (51988889-51988775) | |
| 519-622, gnl|danRer3|chr7 (27558922-27558808) | |
| 519-622, gnl|echTel1|scaffold_284856 (996-886) | |
| 519-622, gnl|galGal2|chr5 (14388300-14388405) | |
| 519-622, gnl|hg17|chr11 (68605441-68605555) | |
| 519-622, gnl|Hg17|chr11 (68605440-68605543) | |
| 519-622, gnl|loxAfr1|scaffold_107703 (4006-4120) | |
| 519-622, gnl|mm7|chr7 (141686323-141686212) | |
| 519-622, gnl|Mm7|chr7 (141686324-141686219) | |
| 519-622, gnl|panTro1|chr9 (69663500-69663614) | |
| 519-622, gnl|rheMac2|chr14 (5678683-5678569) | |
| 519-622, gnl|rn3|chr1 (205861015-205860904) | |
| 519-622, gnl|tetNig1|chrUn_random (32944142-32944220) | |
| 519-622, gnl|xenTro1|scaffold_76 (1115847-1115955) | |
| 1111-1428, gnl|bosTau2|chr29 (41610049-41609724) | |
| 1111-1428, gnl|Hg17|chr11 (68611916-68612252) | |
| 1111-1428, gnl|Mm7|chr7 (141682405-141682056) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) | |
| jca (0.11396) |