Ss1.1-Pig2-104B13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACCCTGTTTGCAGAGTTCCAGGCTTGGAGGGAATCACCCACCCTGGACAAGACCTGCCC GTTCCTGGAACGGGTGTACCGGGAGGACGTGGGCCCCTGCTTGGACTTCACCATGCAGGA GCTCTCGGCCCTGGTCCGGGCTGCTGTGGAGGACAACACACTCACCATCGAGCCCGTGGC TTCGCAGACACTGCCCGCGGTGAAGGTGGCCGCCGTCGAGTGTGGCCGAGCCAATGGGTT CCGGGCCCCGATTGACACTACATGTGCCCTGAGTGGGCTGGTCTGTGCCTGTCGCCACCG AATCCGGCTTGGGGACTCCGAGAGCCACTACTACATCTCGCCATCCTCCCGGGCCAGGAT CACAGCCGTGTGCAACTTCTTCACCTACATCCGCTACATCCAGCAAGGCCTGGTGCGCCA GGACGCGGAGCCCATGTTCTGGGAGATCACGAGGCTGCGGAAGGAGATGTCGCTGGCCAA GCTCGGTTTCTTCCCCCAGGAGGCCTAGGGCCCGGCCCAGGCCTGGAGGGGGGCTCTGAG CTGAAGCCAACGCCCGCGCCAGGACAGACAAACAGATGGGGTCCTGGAGCCGGCCCTGAG CCAGAAGCTGAACAGAGGGACAAATGGCCAGGCCTTGGAGGCAGACCTGAGCCGGCACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACCCTGTTTGCAGAGTTCCAGGCTTGGAGGGAATCACCCACCCTGGACAAGACCTGCCC GTTCCTGGAACGGGTGTACCGGGAGGACGTGGGCCCCTGCTTGGACTTCACCATGCAGGA GCTCTCGGCCCTGGTCCGGGCTGCTGTGGAGGACAACACACTCACCATCGAGCCCGTGGC TTCGCAGACACTGCCCGCGGTGAAGGTGGCCGCCGTCGAGTGTGGCCGAGCCAATGGGTT CCGGGCCCCGATTGACACTACATGTGCCCTGAGTGGGCTGGTCTGTGCCTGTCGCCACCG AATCCGGCTTGGGGACTCCGAGAGCCACTACTACATCTCGCCATCCTCCCGGGCCAGGAT CACAGCCGTGTGCAACTTCTTCACCTACATCCGCTACATCCAGCAAGGCCTGGTGCGCCA GGACGCGGAGCCCATGTTCTGGGAGATCACGAGGCTGCGGAAGGAGATGTCGCTGGCCAA GCTCGGTTTCTTCCCCCAGGAGGCCTAGGGCCCGGCCCAGGCCTGGAGGGGGGCTCTGAG CTGAAGCCAACGCCCGCGCCAGGACAGACAAACAGATGGGGTCCTGGAGCCGGCCCTGAG CCAGAAGCTGAACAGAGGGACAAATGGCCAGGCCTTGGAGGCAGACCTGAGCCGGCACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 2-120, - strand, RNAz p=0.54626 | |
| 425-615, + strand, RNAz p=0.99415 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-120, - strand, RNAz p=0.54626 | |
| 425-615, + strand, RNAz p=0.99415 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC051820, + |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 2-121, gnl|bosTau2|chr29 (31582262-31582381) | |
| 2-121, gnl|canFam2|chr18 (57550084-57550210) | |
| 2-121, gnl|canFam2|chr18 (57550221-57550083) | |
| 2-121, gnl|danRer3|chr16 (22849891-22850026) | |
| 2-121, gnl|dasNov1|scaffold_201964 (4351-4485) | |
| 2-121, gnl|echTel1|scaffold_96892 (3801-3678) | |
| 2-121, gnl|echTel1|scaffold_96892 (3667-3805) | |
| 2-121, gnl|fr1|chrUn (153245576-153245432) | |
| 2-121, gnl|fr1|chrUn (153245442-153245577) | |
| 2-121, gnl|galGal2|chr5 (14137646-14137799) | |
| 2-121, gnl|hg17|chr11 (61428794-61428934) | |
| 2-121, gnl|Hg17|chr11 (61428921-61428802) | |
| 2-121, gnl|hg17|chr7 (33193248-33193374) | |
| 2-121, gnl|loxAfr1|scaffold_2568 (91020-90897) | |
| 2-121, gnl|loxAfr1|scaffold_2568 (90886-91024) | |
| 2-121, gnl|mm7|chr19 (9710274-9710400) | |
| 2-121, gnl|mm7|chr19 (9710412-9710273) | |
| 2-121, gnl|Mm7|chr19 (9710284-9710403) | |
| 2-121, gnl|oryCun1|scaffold_191850 (855-982) | |
| 2-121, gnl|oryCun1|scaffold_191850 (994-855) | |
| 2-121, gnl|panTro1|chr6 (34346083-34346209) | |
| 2-121, gnl|panTro1|chr9 (62403877-62404017) | |
| 2-121, gnl|rheMac2|chr14 (12124503-12124363) | |
| 2-121, gnl|rheMac2|chr3 (92766214-92766089) | |
| 2-121, gnl|rn3|chr1 (212636374-212636500) | |
| 2-121, gnl|rn3|chr1 (212636512-212636373) | |
| 2-121, gnl|tetNig1|chr13 (10979791-10979911) | |
| 2-121, gnl|tetNig1|chr13 (10979925-10979790) | |
| 2-121, gnl|xenTro1|scaffold_357 (1210800-1210666) | |
| 256-358, gnl|bosTau2|chr29 (31584261-31584363) | |
| 256-358, gnl|canFam2|chr18 (57552159-57552009) | |
| 256-358, gnl|danRer3|chr16 (22846542-22846694) | |
| 256-358, gnl|echTel1|scaffold_96892 (1933-2080) | |
| 256-358, gnl|fr1|chrUn (153244708-153244843) | |
| 256-358, gnl|galGal2|chr5 (14134793-14134919) | |
| 256-358, gnl|hg17|chr11 (61426480-61426625) | |
| 256-358, gnl|Hg17|chr11 (61426592-61426490) | |
| 256-358, gnl|mm7|chr19 (9712589-9712445) | |
| 256-358, gnl|Mm7|chr19 (9712475-9712577) | |
| 256-358, gnl|panTro1|chr9 (62401567-62401711) | |
| 256-358, gnl|rheMac2|chr14 (12126800-12126655) | |
| 256-358, gnl|rn3|chr1 (212638702-212638569) | |
| 256-358, gnl|tetNig1|chr13 (10980563-10980451) | |
| 256-358, gnl|xenTro1|scaffold_2106 (34675-34549) | |
| 425-660, gnl|bosTau2|chr29 (31588041-31588276) | |
| 425-660, gnl|Hg17|chr11 (61422409-61422170) | |
| 425-660, gnl|Mm7|chr19 (9714581-9714814) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-121, gnl|bosTau2|chr29 (31582262-31582381) | |
| 2-121, gnl|canFam2|chr18 (57550084-57550210) | |
| 2-121, gnl|canFam2|chr18 (57550221-57550083) | |
| 2-121, gnl|danRer3|chr16 (22849891-22850026) | |
| 2-121, gnl|dasNov1|scaffold_201964 (4351-4485) | |
| 2-121, gnl|echTel1|scaffold_96892 (3801-3678) | |
| 2-121, gnl|echTel1|scaffold_96892 (3667-3805) | |
| 2-121, gnl|fr1|chrUn (153245576-153245432) | |
| 2-121, gnl|fr1|chrUn (153245442-153245577) | |
| 2-121, gnl|galGal2|chr5 (14137646-14137799) | |
| 2-121, gnl|hg17|chr11 (61428794-61428934) | |
| 2-121, gnl|Hg17|chr11 (61428921-61428802) | |
| 2-121, gnl|hg17|chr7 (33193248-33193374) | |
| 2-121, gnl|loxAfr1|scaffold_2568 (91020-90897) | |
| 2-121, gnl|loxAfr1|scaffold_2568 (90886-91024) | |
| 2-121, gnl|mm7|chr19 (9710274-9710400) | |
| 2-121, gnl|mm7|chr19 (9710412-9710273) | |
| 2-121, gnl|Mm7|chr19 (9710284-9710403) | |
| 2-121, gnl|oryCun1|scaffold_191850 (855-982) | |
| 2-121, gnl|oryCun1|scaffold_191850 (994-855) | |
| 2-121, gnl|panTro1|chr6 (34346083-34346209) | |
| 2-121, gnl|panTro1|chr9 (62403877-62404017) | |
| 2-121, gnl|rheMac2|chr14 (12124503-12124363) | |
| 2-121, gnl|rheMac2|chr3 (92766214-92766089) | |
| 2-121, gnl|rn3|chr1 (212636374-212636500) | |
| 2-121, gnl|rn3|chr1 (212636512-212636373) | |
| 2-121, gnl|tetNig1|chr13 (10979791-10979911) | |
| 2-121, gnl|tetNig1|chr13 (10979925-10979790) | |
| 2-121, gnl|xenTro1|scaffold_357 (1210800-1210666) | |
| 256-358, gnl|bosTau2|chr29 (31584261-31584363) | |
| 256-358, gnl|canFam2|chr18 (57552159-57552009) | |
| 256-358, gnl|danRer3|chr16 (22846542-22846694) | |
| 256-358, gnl|echTel1|scaffold_96892 (1933-2080) | |
| 256-358, gnl|fr1|chrUn (153244708-153244843) | |
| 256-358, gnl|galGal2|chr5 (14134793-14134919) | |
| 256-358, gnl|hg17|chr11 (61426480-61426625) | |
| 256-358, gnl|Hg17|chr11 (61426592-61426490) | |
| 256-358, gnl|mm7|chr19 (9712589-9712445) | |
| 256-358, gnl|Mm7|chr19 (9712475-9712577) | |
| 256-358, gnl|panTro1|chr9 (62401567-62401711) | |
| 256-358, gnl|rheMac2|chr14 (12126800-12126655) | |
| 256-358, gnl|rn3|chr1 (212638702-212638569) | |
| 256-358, gnl|tetNig1|chr13 (10980563-10980451) | |
| 256-358, gnl|xenTro1|scaffold_2106 (34675-34549) | |
| 425-660, gnl|bosTau2|chr29 (31588041-31588276) | |
| 425-660, gnl|Hg17|chr11 (61422409-61422170) | |
| 425-660, gnl|Mm7|chr19 (9714581-9714814) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |