Non-Coding RNA Search

Ss1.1-Pig2-104C07.5

Sequence:


               
               TGCAAGAGGCCTGCCTGCGCTTCATGGCCGTCCACTTCCACGAGGTGCTCTGCAAGCCCC
AGTTCCATCTCCTGGGGTCTTCTCCTCCGGCCCCCGGGGATGTCAGCCTGAAACAGAGGC
TGAGAGAGGCCCGGATGACTGGGACTCCTGTGCTCGTGGCGCTGGGTGATTTCCTGGGGG
GACCCCTAGCCCCTCACCCCTATCAAGGAGAGCCCCCGTCCATGCTCAGGTACGAGGAGA
TGACCGAGCGTTGGTTCCCGCTAGCCAACAACCTCCCTCCAGACCTGGTGAACGTCAGGG
GCTATGGGTCCGCCATCCTGGACAACTACCTCTTTATAGTGGGCGGCTACAGGATCACCA
GCCAAGAGATCTCCGCGGCCCACTCCTACAACCCCAGCACCAACGAGTGGCTCCAGGTGG
CCTCCATGAACCAGAAGAGGTCTAACTTCAAACTCGTGGCTGTAAATTCAAAACTCTATG
CCATTGGCGGGCAGGCCGTTTCTAACGTTGAGTGTTATAACCCTGAGCAGGATGCGTGGA
ATTTCATGGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAGAGGCCTGCCTGCGCTTCATGGCCGTCCACTTCCACGAGGTGCTCTGCAAGCCCC
AGTTCCATCTCCTGGGGTCTTCTCCTCCGGCCCCCGGGGATGTCAGCCTGAAACAGAGGC
TGAGAGAGGCCCGGATGACTGGGACTCCTGTGCTCGTGGCGCTGGGTGATTTCCTGGGGG
GACCCCTAGCCCCTCACCCCTATCAAGGAGAGCCCCCGTCCATGCTCAGGTACGAGGAGA
TGACCGAGCGTTGGTTCCCGCTAGCCAACAACCTCCCTCCAGACCTGGTGAACGTCAGGG
GCTATGGGTCCGCCATCCTGGACAACTACCTCTTTATAGTGGGCGGCTACAGGATCACCA
GCCAAGAGATCTCCGCGGCCCACTCCTACAACCCCAGCACCAACGAGTGGCTCCAGGTGG
CCTCCATGAACCAGAAGAGGTCTAACTTCAAACTCGTGGCTGTAAATTCAAAACTCTATG
CCATTGGCGGGCAGGCCGTTTCTAACGTTGAGTGTTATAACCCTGAGCAGGATGCGTGGA
ATTTCATGGCAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-199, - strand, RNAz p=0.727979
               

               
               322-441, - strand, RNAz p=0.712774

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-199, - strand, RNAz p=0.727979
               

               
               322-441, - strand, RNAz p=0.712774

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-441, gnl|bosTau2|chr5 (50471318-50471758)
               

               
               1-441, gnl|Hg17|chr12 (27824964-27825404)
               

               
               1-441, gnl|Mm7|chr6 (147170248-147170688)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-441, gnl|bosTau2|chr5 (50471318-50471758)
               

               
               1-441, gnl|Hg17|chr12 (27824964-27825404)
               

               
               1-441, gnl|Mm7|chr6 (147170248-147170688)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	40-199, - strand, RNAz p=0.727979
	322-441, - strand, RNAz p=0.712774

	1-441, gnl\|bosTau2\|chr5 (50471318-50471758)
	1-441, gnl\|Hg17\|chr12 (27824964-27825404)
	1-441, gnl\|Mm7\|chr6 (147170248-147170688)