Ss1.1-Pig2-104K06.5
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ATGAACATCTACAACCTGATCGCCATCATCCGTGACCAGATCAGGCACCTGCAGGCAGCC
GTGGATCGCACCACAGAGCTGTCGCGCCAGCGCCTGGCCTCGCAGGAGCTGGGCCCAGCT
GCAGACAAGGACCGCGAGGCGCTCATGGAAGAGATCCTGAAGCTAAAGTCGCTGCTCAGC
ACCAAGCGGGAGCAGATCACCACACTGCGCACCGTGCTCAAGGCCAATAAGCAGACAGCA
GAGGTGGCCCTTGCCAACCTGAAGAGCAAGTATGAGAATGAGAAGGCCATGGTGACCGAG
ACCATGATGAAGCTGCGCAATGAGCTCAAGGCCCTCAAGGAAGATGCAGCCACCTTCTCC
TCGCTGCGTGCCATGTTTGCCACCAGGTGTGATGAGTACATTACACAGTTGGATGAGATG
CAGCGGCAATTGGCAGCCGCCGAGGACGAGAAGAAGACACTCAACTCTCTGCTGCGCATG
GCCATCCAGCAAAAGCTGGCACTGACCCAGCGGCTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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ATGAACATCTACAACCTGATCGCCATCATCCGTGACCAGATCAGGCACCTGCAGGCAGCC
GTGGATCGCACCACAGAGCTGTCGCGCCAGCGCCTGGCCTCGCAGGAGCTGGGCCCAGCT
GCAGACAAGGACCGCGAGGCGCTCATGGAAGAGATCCTGAAGCTAAAGTCGCTGCTCAGC
ACCAAGCGGGAGCAGATCACCACACTGCGCACCGTGCTCAAGGCCAATAAGCAGACAGCA
GAGGTGGCCCTTGCCAACCTGAAGAGCAAGTATGAGAATGAGAAGGCCATGGTGACCGAG
ACCATGATGAAGCTGCGCAATGAGCTCAAGGCCCTCAAGGAAGATGCAGCCACCTTCTCC
TCGCTGCGTGCCATGTTTGCCACCAGGTGTGATGAGTACATTACACAGTTGGATGAGATG
CAGCGGCAATTGGCAGCCGCCGAGGACGAGAAGAAGACACTCAACTCTCTGCTGCGCATG
GCCATCCAGCAAAAGCTGGCACTGACCCAGCGGCTA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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376-515, gnl|bosTau2|chr8 (45749018-45748880) |
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376-515, gnl|canFam2|chr1 (101801706-101801517) |
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376-515, gnl|danRer3|chr9 (21966833-21966639) |
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376-515, gnl|dasNov1|scaffold_84157 (1733-1544) |
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376-515, gnl|echTel1|scaffold_309404 (138067-138256) |
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376-515, gnl|fr1|chrUn (197990673-197990858) |
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376-515, gnl|galGal2|chr12 (6884846-6885031) |
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376-515, gnl|hg17|chr9 (92557119-92557308) |
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376-515, gnl|Hg17|chr9 (92557309-92557172) |
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376-515, gnl|loxAfr1|scaffold_82399 (1442-1252) |
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376-515, gnl|mm7|chr13 (48867103-48866914) |
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376-515, gnl|Mm7|chr13 (48866915-48867048) |
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376-515, gnl|monDom2|scaffold_76 (4534391-4534580) |
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376-515, gnl|oryCun1|scaffold_144014 (3491-3680) |
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376-515, gnl|panTro1|chrUn_random (28126233-28126422) |
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376-515, gnl|rheMac2|chr15 (104605284-104605473) |
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376-515, gnl|rn3|chr17 (21218783-21218972) |
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376-515, gnl|tetNig1|chr9 (6813905-6814095) |
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376-515, gnl|xenTro1|scaffold_678 (341407-341592) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
376-515, gnl|bosTau2|chr8 (45749018-45748880) |
|
376-515, gnl|canFam2|chr1 (101801706-101801517) |
|
376-515, gnl|danRer3|chr9 (21966833-21966639) |
|
376-515, gnl|dasNov1|scaffold_84157 (1733-1544) |
|
376-515, gnl|echTel1|scaffold_309404 (138067-138256) |
|
376-515, gnl|fr1|chrUn (197990673-197990858) |
|
376-515, gnl|galGal2|chr12 (6884846-6885031) |
|
376-515, gnl|hg17|chr9 (92557119-92557308) |
|
376-515, gnl|Hg17|chr9 (92557309-92557172) |
|
376-515, gnl|loxAfr1|scaffold_82399 (1442-1252) |
|
376-515, gnl|mm7|chr13 (48867103-48866914) |
|
376-515, gnl|Mm7|chr13 (48866915-48867048) |
|
376-515, gnl|monDom2|scaffold_76 (4534391-4534580) |
|
376-515, gnl|oryCun1|scaffold_144014 (3491-3680) |
|
376-515, gnl|panTro1|chrUn_random (28126233-28126422) |
|
376-515, gnl|rheMac2|chr15 (104605284-104605473) |
|
376-515, gnl|rn3|chr17 (21218783-21218972) |
|
376-515, gnl|tetNig1|chr9 (6813905-6814095) |
|
376-515, gnl|xenTro1|scaffold_678 (341407-341592) |
