Ss1.1-Pig2-104K12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTACGGAGGGGAGAACATTGAGCTGGGCATGAGGGTGTGGCAGTGTGGTGGCAGCATGG AGGTGCTGCCCTGCTCCCGTGTGGCCCACATCGAGCGCACCAAGAAGCCCTACAATAACG ATATAGACTACTACGCCAAGCGCAACGCCCTGCGGGCGGCTGAGGTGTGGATGGACGGCT TCAAGTCCCACGTATACATGGCCTGGAACATCCCTATGACTAACCCAGGCGTGGACTTCG GGGACGTGTCCGAGCGGCTGGCCCTGCGTCAGAGGCTGAAATGCCGCAGCTTCAAGTGGT ACCTGGACAACGTGTACCCAGAGATGCGGACTTACAACGATACGCTTACGTACGGAGAGG TGAGGAACAGCAAAGCCAGCGGCTACTGCTTGGACCAGGGGGCAGAGGACGACGACCGTG CCATCCTATATCCCTGCCATGGGATGTCCTCCCAGCTGGTGCGGTACAGTGCCGAGGGCC TGCTGCAGCTGGGTCCCCTGGGCTCCACCGCCTTCCTGCCTGACTCCAAGTGCCTGGTGG ATGACGGCAGGGGCCGCACGCCCGCCCTGAAGAAGTGTGAGGATGTGGCCCGGCCAGCAC AGCGGCTGTGGGACTTCACCCAGGGCGGTCCCATCGTGAGCAGAGACACGGGCCGGTGCC TGGAGGTGGAGATGTCCAAGGACGCCAACTTCGGGCTCCGGCTGGTGGTGCAGAGGTGCT CGGGGCAGAAGTGGACTATCAGAAACTGGATCAAGCCAGGGCGGCACTGACTCCCACTGT GCCCTGTGCCCCTGCCCCAGCGCTGACCCCACCACTAGAACCAGAGGGCCCTGGCCGTGC CCGTGCCACCTCAGCGCCCTGTGGGGCCCCATCACCCATGACATTGGGGCCTCCCCGTAC TCTGGAGGAGGTGCCGGGACCAGCCATCTATCCTGGAGCACAGACCCCCCTGGGCTCTCT CTCTCCTCGGAGAGCATCAGCTGACAGCCAATTCCAGCTCCAGATCACGTGCCTTTTCTA CGGTATTCCTGTCTGGCCGCCCGCCAGCTGCCTCTTCTGCATGTGCTGAAGCCCCATCCA CGCTCCAGGCAGAAATAGCCCCCTGTCAACTGCGACCTCCCATCCTCTGCTCCCCATGGC GGGCCCGCCCCTGTGACCACCTCCCTGTAAACTGAGCAGAGCAAGCGAGGGAAAACAGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTACGGAGGGGAGAACATTGAGCTGGGCATGAGGGTGTGGCAGTGTGGTGGCAGCATGG AGGTGCTGCCCTGCTCCCGTGTGGCCCACATCGAGCGCACCAAGAAGCCCTACAATAACG ATATAGACTACTACGCCAAGCGCAACGCCCTGCGGGCGGCTGAGGTGTGGATGGACGGCT TCAAGTCCCACGTATACATGGCCTGGAACATCCCTATGACTAACCCAGGCGTGGACTTCG GGGACGTGTCCGAGCGGCTGGCCCTGCGTCAGAGGCTGAAATGCCGCAGCTTCAAGTGGT ACCTGGACAACGTGTACCCAGAGATGCGGACTTACAACGATACGCTTACGTACGGAGAGG TGAGGAACAGCAAAGCCAGCGGCTACTGCTTGGACCAGGGGGCAGAGGACGACGACCGTG CCATCCTATATCCCTGCCATGGGATGTCCTCCCAGCTGGTGCGGTACAGTGCCGAGGGCC TGCTGCAGCTGGGTCCCCTGGGCTCCACCGCCTTCCTGCCTGACTCCAAGTGCCTGGTGG ATGACGGCAGGGGCCGCACGCCCGCCCTGAAGAAGTGTGAGGATGTGGCCCGGCCAGCAC AGCGGCTGTGGGACTTCACCCAGGGCGGTCCCATCGTGAGCAGAGACACGGGCCGGTGCC TGGAGGTGGAGATGTCCAAGGACGCCAACTTCGGGCTCCGGCTGGTGGTGCAGAGGTGCT CGGGGCAGAAGTGGACTATCAGAAACTGGATCAAGCCAGGGCGGCACTGACTCCCACTGT GCCCTGTGCCCCTGCCCCAGCGCTGACCCCACCACTAGAACCAGAGGGCCCTGGCCGTGC CCGTGCCACCTCAGCGCCCTGTGGGGCCCCATCACCCATGACATTGGGGCCTCCCCGTAC TCTGGAGGAGGTGCCGGGACCAGCCATCTATCCTGGAGCACAGACCCCCCTGGGCTCTCT CTCTCCTCGGAGAGCATCAGCTGACAGCCAATTCCAGCTCCAGATCACGTGCCTTTTCTA CGGTATTCCTGTCTGGCCGCCCGCCAGCTGCCTCTTCTGCATGTGCTGAAGCCCCATCCA CGCTCCAGGCAGAAATAGCCCCCTGTCAACTGCGACCTCCCATCCTCTGCTCCCCATGGC GGGCCCGCCCCTGTGACCACCTCCCTGTAAACTGAGCAGAGCAAGCGAGGGAAAACAGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 35-221, gnl|bosTau2|chr17 (23538100-23538286) | |
| 35-221, gnl|canFam2|chr26 (3772236-3772002) | |
| 35-221, gnl|danRer3|chr5 (6582022-6581820) | |
| 35-221, gnl|dasNov1|scaffold_102227 (7128-6944) | |
| 35-221, gnl|echTel1|scaffold_185409 (1501-1266) | |
| 35-221, gnl|fr1|chrUn (149738647-149738444) | |
| 35-221, gnl|galGal2|chr15 (2422908-2422710) | |
| 35-221, gnl|hg17|chr12 (131354275-131354503) | |
| 35-221, gnl|Hg17|chr12 (131354466-131354280) | |
| 35-221, gnl|loxAfr1|scaffold_217606 (637-859) | |
| 35-221, gnl|mm7|chr5 (109780477-109780276) | |
| 35-221, gnl|Mm7|chr5 (109780285-109780471) | |
| 35-221, gnl|monDom2|scaffold_54 (3468141-3467935) | |
| 35-221, gnl|oryCun1|scaffold_172234 (3843-3632) | |
| 35-221, gnl|panTro1|chr10 (134395682-134395910) | |
| 35-221, gnl|rheMac2|chr11 (133539262-133539490) | |
| 35-221, gnl|rn3|chr12 (46066292-46066492) | |
| 35-221, gnl|tetNig1|chr16 (6340674-6340870) | |
| 35-221, gnl|xenTro1|scaffold_322 (1246538-1246732) | |
| 222-361, gnl|bosTau2|chr17 (23540163-23540302) | |
| 222-361, gnl|canFam2|chr26 (3774761-3774615) | |
| 222-361, gnl|danRer3|chr5 (6596744-6596598) | |
| 222-361, gnl|dasNov1|scaffold_6097 (16911-17055) | |
| 222-361, gnl|echTel1|scaffold_185409 (2360-2214) | |
| 222-361, gnl|fr1|chrUn (149740008-149739863) | |
| 222-361, gnl|galGal2|chr15 (2426496-2426351) | |
| 222-361, gnl|hg17|chr12 (131351897-131352043) | |
| 222-361, gnl|Hg17|chr12 (131352036-131351897) | |
| 222-361, gnl|loxAfr1|scaffold_13197 (32200-32346) | |
| 222-361, gnl|mm7|chr5 (109781746-109781601) | |
| 222-361, gnl|Mm7|chr5 (109781605-109781744) | |
| 222-361, gnl|monDom2|scaffold_54 (3473662-3473516) | |
| 222-361, gnl|oryCun1|scaffold_163626 (110-255) | |
| 222-361, gnl|panTro1|chr10 (134393353-134393479) | |
| 222-361, gnl|rheMac2|chr11 (133536976-133537122) | |
| 222-361, gnl|rn3|chr12 (46064673-46064818) | |
| 222-361, gnl|tetNig1|chr16 (6340459-6340604) | |
| 222-361, gnl|xenTro1|scaffold_322 (1238566-1238712) | |
| 431-624, gnl|bosTau2|chr17 (23547759-23547950) | |
| 431-624, gnl|Hg17|chr12 (131348745-131348566) | |
| 431-624, gnl|Mm7|chr5 (109785354-109785541) | |
| 859-1172, gnl|bosTau2|chr17 (23549390-23549702) | |
| 859-1172, gnl|Hg17|chr12 (131347771-131347428) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 35-221, gnl|bosTau2|chr17 (23538100-23538286) | |
| 35-221, gnl|canFam2|chr26 (3772236-3772002) | |
| 35-221, gnl|danRer3|chr5 (6582022-6581820) | |
| 35-221, gnl|dasNov1|scaffold_102227 (7128-6944) | |
| 35-221, gnl|echTel1|scaffold_185409 (1501-1266) | |
| 35-221, gnl|fr1|chrUn (149738647-149738444) | |
| 35-221, gnl|galGal2|chr15 (2422908-2422710) | |
| 35-221, gnl|hg17|chr12 (131354275-131354503) | |
| 35-221, gnl|Hg17|chr12 (131354466-131354280) | |
| 35-221, gnl|loxAfr1|scaffold_217606 (637-859) | |
| 35-221, gnl|mm7|chr5 (109780477-109780276) | |
| 35-221, gnl|Mm7|chr5 (109780285-109780471) | |
| 35-221, gnl|monDom2|scaffold_54 (3468141-3467935) | |
| 35-221, gnl|oryCun1|scaffold_172234 (3843-3632) | |
| 35-221, gnl|panTro1|chr10 (134395682-134395910) | |
| 35-221, gnl|rheMac2|chr11 (133539262-133539490) | |
| 35-221, gnl|rn3|chr12 (46066292-46066492) | |
| 35-221, gnl|tetNig1|chr16 (6340674-6340870) | |
| 35-221, gnl|xenTro1|scaffold_322 (1246538-1246732) | |
| 222-361, gnl|bosTau2|chr17 (23540163-23540302) | |
| 222-361, gnl|canFam2|chr26 (3774761-3774615) | |
| 222-361, gnl|danRer3|chr5 (6596744-6596598) | |
| 222-361, gnl|dasNov1|scaffold_6097 (16911-17055) | |
| 222-361, gnl|echTel1|scaffold_185409 (2360-2214) | |
| 222-361, gnl|fr1|chrUn (149740008-149739863) | |
| 222-361, gnl|galGal2|chr15 (2426496-2426351) | |
| 222-361, gnl|hg17|chr12 (131351897-131352043) | |
| 222-361, gnl|Hg17|chr12 (131352036-131351897) | |
| 222-361, gnl|loxAfr1|scaffold_13197 (32200-32346) | |
| 222-361, gnl|mm7|chr5 (109781746-109781601) | |
| 222-361, gnl|Mm7|chr5 (109781605-109781744) | |
| 222-361, gnl|monDom2|scaffold_54 (3473662-3473516) | |
| 222-361, gnl|oryCun1|scaffold_163626 (110-255) | |
| 222-361, gnl|panTro1|chr10 (134393353-134393479) | |
| 222-361, gnl|rheMac2|chr11 (133536976-133537122) | |
| 222-361, gnl|rn3|chr12 (46064673-46064818) | |
| 222-361, gnl|tetNig1|chr16 (6340459-6340604) | |
| 222-361, gnl|xenTro1|scaffold_322 (1238566-1238712) | |
| 431-624, gnl|bosTau2|chr17 (23547759-23547950) | |
| 431-624, gnl|Hg17|chr12 (131348745-131348566) | |
| 431-624, gnl|Mm7|chr5 (109785354-109785541) | |
| 859-1172, gnl|bosTau2|chr17 (23549390-23549702) | |
| 859-1172, gnl|Hg17|chr12 (131347771-131347428) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cag (0.151194) |