Non-Coding RNA Search

Ss1.1-Pig2-105D24.5

Sequence:


               
               GCAGCGGCGACACGGCGGAGCCCTCCGAGGCGGGTGACGCGCCTCCTGACGACGGGCCTC
CCGGGGAGTTGGGTCCCGACGGCCCGGAAGGCCCTGAGGAGAAGGGCCGTGATCGCGACC
GGGAACGACGTCGGAGCCACCGGAGCGAGCGGGAGCGGCGTCGGGACCGCGATCGAGACC
GGGAGCGGGACCACAAGCGGGGGGAGCGGGGCGGAGAGCGGGGCAGGGATGAGGCCCGGG
GTGGGGGTGGCGGTGGTGGCCAGGACAACGGGCTAGAGGGTCTGGGCAACGACAGCCGTG
ACATGTACATGGAGGCTGAGGGCGGCGACGGGTATCTCGCTCCAGAGAACGGGTATTTGA
TGGAGGCGGCACCAGAGTGAAGAGGGCTGCTTGCCAGCAGTTGGGACGTGCTCCTACCCT
CCCTGTTGCTGTCGACCTCTCCCCCCACCTTCTTGGCCACCACCTAAGTTTGCCAGCCAA
GGGTAGGAGTCTTCCTATTTGTTCTGGTCTCGGATTTAAAAATAAAATTAATTTCTTGTT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCGGCGACACGGCGGAGCCCTCCGAGGCGGGTGACGCGCCTCCTGACGACGGGCCTC
CCGGGGAGTTGGGTCCCGACGGCCCGGAAGGCCCTGAGGAGAAGGGCCGTGATCGCGACC
GGGAACGACGTCGGAGCCACCGGAGCGAGCGGGAGCGGCGTCGGGACCGCGATCGAGACC
GGGAGCGGGACCACAAGCGGGGGGAGCGGGGCGGAGAGCGGGGCAGGGATGAGGCCCGGG
GTGGGGGTGGCGGTGGTGGCCAGGACAACGGGCTAGAGGGTCTGGGCAACGACAGCCGTG
ACATGTACATGGAGGCTGAGGGCGGCGACGGGTATCTCGCTCCAGAGAACGGGTATTTGA
TGGAGGCGGCACCAGAGTGAAGAGGGCTGCTTGCCAGCAGTTGGGACGTGCTCCTACCCT
CCCTGTTGCTGTCGACCTCTCCCCCCACCTTCTTGGCCACCACCTAAGTTTGCCAGCCAA
GGGTAGGAGTCTTCCTATTTGTTCTGGTCTCGGATTTAAAAATAAAATTAATTTCTTGTT
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UFS1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UFS1_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-545, gnl|bosTau2|chr18 (48239418-48239952)
               

               
               1-545, gnl|Hg17|chr19 (54303133-54303676)
               

               
               1-545, gnl|Mm7|chr7 (41552701-41552186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-545, gnl|bosTau2|chr18 (48239418-48239952)
               

               
               1-545, gnl|Hg17|chr19 (54303133-54303676)
               

               
               1-545, gnl|Mm7|chr7 (41552701-41552186)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               cst (0.420109)
               

               
               fty (0.351679)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 20 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.420109)
               

               
               fty (0.351679)
               

               
               eye (0.341006)
               

               
               fce (0.271592)
               

               
               ute (0.265569)
               

               
               ebs (0.236602)
               

               
               med (0.232504)
               

               
               cty (0.20816)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               ese (0.126502)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-545, gnl\|bosTau2\|chr18 (48239418-48239952)
	1-545, gnl\|Hg17\|chr19 (54303133-54303676)
	1-545, gnl\|Mm7\|chr7 (41552701-41552186)

	cst (0.420109)
	fty (0.351679)
	eye (0.341006)
	fce (0.271592)
	ute (0.265569)
	ebs (0.236602)
	med (0.232504)
	cty (0.20816)
	ill (0.175593)
	fbs (0.175346)
	nje (0.16592)
	cki (0.165235)
	eli (0.151814)
	cag (0.151194)
	pty (0.142714)
	hlv (0.139256)
	ese (0.126502)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)