Non-Coding RNA Search

Ss1.1-Pig2-105E09.5

Sequence:


               
               TCAAGACTCTATACAAGGAGGGCGCAGGCAGGGAGAGGTATCGATGTATAGTTGCCAAAT
AGCACAAGCAATGAATGTTTTCTGGTGGTTATATAGATGCCAAAATAGCACTTTTGTCTT
TGTAAAGTGCTTTATGCTTTTTGATGATTGTTAGTTGTTTCTCATGTCTTTGTGAGGTAG
AACAGTATTAAGTCCCCTGTCTTAGGGAAGACGTGGGGACAGGAGTGCGACAGACGTTTC
TCTCTTTAGAGGCCAATGACCGTGTGGATAGGTGTGGTCTGACCTTTTGTGCTCTCCAAC
GCAGCTGCTAGGAAGACTTACCCTGTCGTGATTTATATAATAAGGACACTGAAAATTCTT
ACACTTGGCGGACAACGTTAAGGCTAGCCTAGTAGGGCCAAAGATGTCCTTGTTGACAAA
GCTGGTCTTTGTCATGTAATTAGAGTGTCCTAGATATGTCCCATTTCTAGTCGGGGCTAT
AGTTAGATGACTCTTGTATAGACTTCAGTTACCCATGCTGAAAATCCCTTCCGTAGGTTA
GCCTTTAGAAGGTAGAATTGTGGAAAGCAGTTTTGTTTTCCTTACTAGCGACTGTTCCCC
TGTTTTTCATGGAAGAATCTTCATGAACTGTTGGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAGACTCTATACAAGGAGGGCGCAGGCAGGGAGAGGTATCGATGTATAGTTGCCAAAT
AGCACAAGCAATGAATGTTTTCTGGTGGTTATATAGATGCCAAAATAGCACTTTTGTCTT
TGTAAAGTGCTTTATGCTTTTTGATGATTGTTAGTTGTTTCTCATGTCTTTGTGAGGTAG
AACAGTATTAAGTCCCCTGTCTTAGGGAAGACGTGGGGACAGGAGTGCGACAGACGTTTC
TCTCTTTAGAGGCCAATGACCGTGTGGATAGGTGTGGTCTGACCTTTTGTGCTCTCCAAC
GCAGCTGCTAGGAAGACTTACCCTGTCGTGATTTATATAATAAGGACACTGAAAATTCTT
ACACTTGGCGGACAACGTTAAGGCTAGCCTAGTAGGGCCAAAGATGTCCTTGTTGACAAA
GCTGGTCTTTGTCATGTAATTAGAGTGTCCTAGATATGTCCCATTTCTAGTCGGGGCTAT
AGTTAGATGACTCTTGTATAGACTTCAGTTACCCATGCTGAAAATCCCTTCCGTAGGTTA
GCCTTTAGAAGGTAGAATTGTGGAAAGCAGTTTTGTTTTCCTTACTAGCGACTGTTCCCC
TGTTTTTCATGGAAGAATCTTCATGAACTGTTGGAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-198, + strand, RNAz p=0.996367

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-198, + strand, RNAz p=0.996367

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               52-190, DA703068 NT2RI2 Homo sapiens cDNA clone NT2RI2006116 5', mRNA 
(dbj|DA703068.1|), blast E-value=6e-38, identity=89.93% 
               

               
               52-190, DA704349 NT2RI2 Homo sapiens cDNA clone NT2RI2007666 5', mRNA 
(dbj|DA704349.1|), blast E-value=6e-38, identity=89.93% 
               

               
               52-190, DA713909 NT2RI2 Homo sapiens cDNA clone NT2RI2020649 5', mRNA 
(dbj|DA713909.1|), blast E-value=6e-38, identity=89.93% 
               

               
               52-175, hb03g07.g1 Canis cDNAs from testes cells Canis familiaris cDNA 
(gb|BM539019.1|), blast E-value=2.99878e-43, identity=93.55% 
               

               
               52-175, CH3#015_C08T7 Canine heart normalized cDNA Library in pBluescript 
(gb|BU747749.1|), blast E-value=2.99878e-43, identity=93.55% 
               

               
               52-190, LB02213.CR_A21 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE238822.1|), 
blast E-value=1.00053e-42, identity=91.37%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               52-190, DA703068 NT2RI2 Homo sapiens cDNA clone NT2RI2006116 5', mRNA 
(dbj|DA703068.1|), blast E-value=6e-38, identity=89.93% 
               

               
               52-190, DA704349 NT2RI2 Homo sapiens cDNA clone NT2RI2007666 5', mRNA 
(dbj|DA704349.1|), blast E-value=6e-38, identity=89.93% 
               

               
               52-190, DA713909 NT2RI2 Homo sapiens cDNA clone NT2RI2020649 5', mRNA 
(dbj|DA713909.1|), blast E-value=6e-38, identity=89.93% 
               

               
               52-175, hb03g07.g1 Canis cDNAs from testes cells Canis familiaris cDNA 
(gb|BM539019.1|), blast E-value=2.99878e-43, identity=93.55% 
               

               
               52-175, CH3#015_C08T7 Canine heart normalized cDNA Library in pBluescript 
(gb|BU747749.1|), blast E-value=2.99878e-43, identity=93.55% 
               

               
               52-190, LB02213.CR_A21 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb|EE238822.1|), 
blast E-value=1.00053e-42, identity=91.37%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr3 (20196541-20197173)
               

               
               1-636, gnl|Hg17|chr1 (119876208-119875570)
               

               
               1-636, gnl|Mm7|chr3 (98301240-98301852)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr3 (20196541-20197173)
               

               
               1-636, gnl|Hg17|chr1 (119876208-119875570)
               

               
               1-636, gnl|Mm7|chr3 (98301240-98301852)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	52-190, DA703068 NT2RI2 Homo sapiens cDNA clone NT2RI2006116 5', mRNA (dbj\|DA703068.1\|), blast E-value=6e-38, identity=89.93%
	52-190, DA704349 NT2RI2 Homo sapiens cDNA clone NT2RI2007666 5', mRNA (dbj\|DA704349.1\|), blast E-value=6e-38, identity=89.93%
	52-190, DA713909 NT2RI2 Homo sapiens cDNA clone NT2RI2020649 5', mRNA (dbj\|DA713909.1\|), blast E-value=6e-38, identity=89.93%
	52-175, hb03g07.g1 Canis cDNAs from testes cells Canis familiaris cDNA (gb\|BM539019.1\|), blast E-value=2.99878e-43, identity=93.55%
	52-175, CH3#015_C08T7 Canine heart normalized cDNA Library in pBluescript (gb\|BU747749.1\|), blast E-value=2.99878e-43, identity=93.55%
	52-190, LB02213.CR_A21 GC_BGC-22 Bos taurus cDNA clone IMAGE (gb\|EE238822.1\|), blast E-value=1.00053e-42, identity=91.37%

	1-636, gnl\|bosTau2\|chr3 (20196541-20197173)
	1-636, gnl\|Hg17\|chr1 (119876208-119875570)
	1-636, gnl\|Mm7\|chr3 (98301240-98301852)